Gene Hoch_3653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3653 
Symbol 
ID8546043 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp5029063 
End bp5030016 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content73% 
IMG OID646388322 
ProducttRNA delta(2)-isopentenylpyrophosphate transferase 
Protein accessionYP_003268048 
Protein GI262196839 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase 
TIGRFAM ID[TIGR00174] tRNA isopentenyltransferase (miaA) 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0107343 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTGGCT CCGATACGCC CCGCCCGCCC CTGGTCGTGA TCGTGGGACC CACGGCCTCG 
GGCAAGAGCG ACGCCGCGCT GGCGCTGGCC GAGCGCGTCG GCGGCGAGGT GGTGTCCGCC
GATTCGCAGC AGGTCTACAC CGGCATGGAC ATCGGCACCG GCAAGGTCTC GGCCGAGGTG
CGCGCGCGCG TGCCCCATCA CCTCCTCGAC GTCATCAGCC CGGCCGAGGA GATGACGGCC
GCGCGCTTCG TCGAATTGGC CGATCGCGTC ATCGCCGACG CGAGCGCGCG CGGGCGGCCC
GTGATCGTGG CCGGCGGCAC CGGGCTGTAC GTGCGCGCCC TGCTCTTCGG CCTGTTCGAG
GGGCCACCCG CGCAGCCCGC CCTGCGCGAG AGGCTGCGCG CCGAAGCCGA GGCCGGAGGT
GGCGCGCCGG CGCTGTGGCA GCGACTCCGC GCGGTCGACG CCGCGGGCGC CGCGCGCATC
GACCACAATG ATCTACGCCG AATCATCCGC GCGCTCGAGG TCTTCGAGAC CACGGGCGTG
CCGATGAGCG TGCACCAGGC GCGTCACGAC TTCCGCACGC TCGAGCCGCG CTATCCCGTG
CGCATGCTCG GTCTGGCGCC GGCGCGCGAG CAGCTCTATA AGCGCATCGA TACGCGGGTC
GAGGCCATGG TCGAGGCCGG GCTGGTGGCC GAGGTCGAGG CGCTGCGCGC GGCCGGCATC
GACCGCAGCT ATCGTTCGCA AGCCGCCATC GGCTACGCCG AGCTGCACGA GCACCTCGAC
GGCGCGCTGC CGCTGGCCGA CGCGATCGCG CGGATCCAGC AGAACTCGCG CCGCTACGCG
CGCAGGCAGC TATCCTGGTA TCGGCGCGAC CCCCGGGTGG CGTGGGCCAG CGACCTCTCG
GTCATTGACC TTCCGGCGCT GGAGCGCTAC CTACGGTCGA GACCGCAGCG CTGA
 
Protein sequence
MTGSDTPRPP LVVIVGPTAS GKSDAALALA ERVGGEVVSA DSQQVYTGMD IGTGKVSAEV 
RARVPHHLLD VISPAEEMTA ARFVELADRV IADASARGRP VIVAGGTGLY VRALLFGLFE
GPPAQPALRE RLRAEAEAGG GAPALWQRLR AVDAAGAARI DHNDLRRIIR ALEVFETTGV
PMSVHQARHD FRTLEPRYPV RMLGLAPARE QLYKRIDTRV EAMVEAGLVA EVEALRAAGI
DRSYRSQAAI GYAELHEHLD GALPLADAIA RIQQNSRRYA RRQLSWYRRD PRVAWASDLS
VIDLPALERY LRSRPQR