Gene Hoch_3489 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3489 
Symbol 
ID8545878 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand- 
Start bp4818598 
End bp4819242 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content72% 
IMG OID646388157 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_003267884 
Protein GI262196675 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.481543 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.892372 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGATT CCGTCTATGA TGCCCTGCGC GTCGAGTACG AGGGCAAACC CCTGCGCGAA 
GACGAGGTCG CCGCCGACCC CATGGAGCAG TTCCTGCGCT GGTTCGACGA CGCCACCGCG 
GCCGAGCTGC CGCTGGCCAA CGGCATGACC CTGGCCACGG TCGACGCCGA GGGCGCGCCG 
GCCGCGCGCA TCGTGCTGCT CAAAGACACC GACGCGCGCG GCTTCGTGTT CTTCAGCAAC 
TACGACAGCG ACAAGGGCCA GCAGCTCGCC CACGAGCAGC GCGCCGCCCT GCTGTTCTGG 
TGGGTACCGC TGAGCCGCCA GGTGCGCATC GAGGGCAGCG TCGAGCGGGT CGATGCCGCG 
ATCTCGGACG CCTACTTCGC CAAGCGCCCG CGGGCCAGCA ACCTCAGCGC CATGGCCTCG 
CCGCAGAGCC GCGAGGTGCC CGATCGCGCC TGGCTCGAGC GCGCCGTCGA CGAGCTGAGC 
GACCGGGTCG GCGAGGGCTC GCTCACGCGC CCGCCGAGCT GGGGCGGCTA CCGGCTGGTG 
CCGCGCGGCT TCGAGTTCTG GCAGGGACGC GCCGACCGCC TGCACGACCG CGTCTGCTAC 
CGCCGCGACG GCGACGCCTG GACGCGCTAC CGCCTGGCGC CCTGA
 
Protein sequence
MSDSVYDALR VEYEGKPLRE DEVAADPMEQ FLRWFDDATA AELPLANGMT LATVDAEGAP 
AARIVLLKDT DARGFVFFSN YDSDKGQQLA HEQRAALLFW WVPLSRQVRI EGSVERVDAA 
ISDAYFAKRP RASNLSAMAS PQSREVPDRA WLERAVDELS DRVGEGSLTR PPSWGGYRLV 
PRGFEFWQGR ADRLHDRVCY RRDGDAWTRY RLAP