| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3330 |
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| Symbol | |
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| ID | 8545718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 4605709 |
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| End bp | 4608399 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 646387997 |
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| Product | DNA ligase D |
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| Protein accession | YP_003267725 |
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| Protein GI | 262196516 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.580871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.138663 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGGA AGCGACACGG CGGGCGGGGC CTCGAGACCT ATCGCGCCAA GCGCGACCCC
GCGGCCACGC CGGAGCCGTT CGGCGGGCGG GTCGGTGGTC CCGAGTGGCG CGCGGCGGCT
GGCCGAGCGG CGCCCTTCGT GGTCCACAAG CACGCGGCGC GGCGTCTGCA CTACGATCTG
CGCCTGGCCA TGGACGGCGT GCTGCTGTCC TGGGCGGTGC CCAGAGGGCC CTCGCTGTCG
TCGTCGGACA GGCGTCTGGC CGTCCAGGTC GAGGACCATC CGCTCGACTA CGCCTGGTTC
GAGGGCGTCA TCCCAGCCGG GGAATACGGC GCCGGCGCCA GCATCGTGTG GGACGCGGGC
TCGTGGCTGC CGAGCGCGGA TCCGCGCCGC GGGCTCGAGG ACGGCGCGCT CGAGTTCGAG
CTCTTTGGCT ACAAGCTGCG CGGCGGCTTC CGCCTGGTGC GCACCGGCAA ACGCGGCCAG
GGCGCGGGCA AGGAGTGGCT GCTGCTCAAG CGCCGCGACG GCTTCGCCGA TGACGACGCG
GTCCTGGTCG AGAGCTCGGT GCTGTCGGGG CTCACGGTCG AGGAGCTGGG CGCCGGGCCG
ACCCGGGCCC AGCAGGCCGC GGCCGCGCTC GACGCGCTCG CGGCGCCGGC GCGGCGGCTG
CGCGTGGACC AGGTGGCGCC GATGCTGTGC GAGCTGGCCG ACGGGCCGTT CTCGGATCCC
GACTGGGTGT ACGAACTCAA ATACGACGGC TACCGCATGC TGGCCGGCAT CGCCGATGGC
GAGGTCAGCC TGCGCTTGCG CAGCGGCCGC GACGCCACCG CGCTGTTCCC CGAAATCGTC
CGCGCGCTGC GCCGCTGGCC GCTGGCCGAC GCGGTGCTCG ACGGCGAGGT GGTGGCCCTC
GACGAGGCCG GGCGGCCGGT GTTTCAGCGC CTGCAGCCGC GCAATCGCCC CGCGGGCGCG
GACGAGATCG AGCGCGCGGC CGCGCTGGCG CCGGTGAGCT ACGCGGTCTT CGACCTGCTC
GCCTGCGAGG GCCGCGATCT GCGCGCGCTG CCGCTGCTGG CGCGCAAGCA GGTGCTGGCG
CCGCTGGTGC CCGCGCGCGG TCCGGTGCGC TACGCCGACC ACGTCGAGGC CCAGGGCGAG
GCGTTTTTCG ACCAGGTGGT CGCCCACGGC CTCGAGGGCG TGGTGGCCAA GCGCGCGTCC
TCGAGCTACC AGGGCCGGCG CAGCGACGAG TGGCGCAAGA TCCGGCAGAT TCGCCACGGC
CGCTTCGTCA TCGTCGGCAC CACCTCGCCC AGGGGCGGGC GCGCGGGGTT TGGCTCGCTG
CACCTGGCCG CCTGGGACCA CGGCTGGGTG TACGTGGGCC GCGTGGGCAC GGGCTTCGAC
GCGCGCGCGC TGCGCGAGAT CGCGGCCCGA CTCGAGGCCC TGCCGCGGTG GCGGCCGAGC
TTCCCGGCGC CGTCGTCGCC CGGCCGGCGC GACCGCTGGC TCGCGCCGAC GCTGGTGTGC
GAGGTCGGCT ATCAGGACGT GTCCGACGAT GGCCGCCTGC GGCTGCCGCG CTTCGTCGGG
CTGTGCCCCG AGGTCGCGCC CGAGGACTGT CCGCCGCCGC GCTCGGCGCG CGCGCTGGCC
GACGCTCGCG CCTCCGGGTT CGCTACCGCG ACCGCCGACG CCGACGCCGA CGCCGACGCC
GAGGATACAG ACGCGGTCCG CCAGGCTGCC GAGAACCCGG CCGGGGCGCG CGAGCCGGCC
GCCAGCGGCG CGGACCAAGA CGGCATCGAC GACCGGGCGC CGCGGGGGCA GGTGAGCAAC
CCGGACAAGC TCTACTTTCC CGCCGGCGCG GGCCGGCGCG CGCACAGCAA GGGCGCGTTG
GTCGCCTACT ACCGGGCCGT CGCGCCGTGG ATGCTGCCGT ACTTGCGCGA TCGCCCGCTA
GCCCTGGTGC GCTTCCCCGA GGGCATCGAG GGGCCGTCGT TCTTCCAAAA GGACGCGCCC
GCCTGGGTGC CGGCGTGGCT GCGCACCGAG ACGCTGTGGA GCCCGCAGGC CCAGCGCACG
CTGCGCTACA TCATCTGCGA CAGCGAGGAC GCGCTGGCCT TTGTGGCCAA TCTCGGCGCC
ATCGCCGTGC ACACCTGGTC GGCGCGCATC GGCGCGCTGG GCCGCCCCGA CTGGGCCATC
CTGGATCTCG ACCCCAAGGG CGCGCCCTTC GTCCACGTGG TCGAAATCGC CCGGGCGTTG
CGCGCGCTGT GCCGCGCGCT CGACCTGGCG TGCTTCGTCA AGACCAGCGG CGCCACCGGG
CTGCACGTGC TGATCCCGCT CGGCGGCAGT TGCACGCACG AGCAAGCGCG CACCCTGGCC
CAGCTCCTGG CCCAGCTCGT GTGCGCCGAG CATCCCGCGA TCGCGACCAC GGCCCGGCCG
CTGGCCGCGC GCGGCGGCCG CGTGTACATC GACTGTGTGC AGAACGGCCA GGGCCGGCTG
CTGGTGGCGC CGCTGAGCGT GCGCGCGCGG CCCGGGGCGC CGGTGTCGAT GCCGCTGCGC
TGGCGCGAGC TCTCGCCCAA GCTCGACCCC GCGCGCTTCA CCATCGACAA GGCCGTCGCC
CGGCTGCGGC GCATGGACCC GGAGCCCTTC GCCGGTCTGC TCGACACCCG ACCCGACCTG
GCGCGCGCGC TGGCGCTGCT CGAGGAGCGG CTCGGGCTCA GCCGCGGTTG A
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| Protein sequence | MSGKRHGGRG LETYRAKRDP AATPEPFGGR VGGPEWRAAA GRAAPFVVHK HAARRLHYDL
RLAMDGVLLS WAVPRGPSLS SSDRRLAVQV EDHPLDYAWF EGVIPAGEYG AGASIVWDAG
SWLPSADPRR GLEDGALEFE LFGYKLRGGF RLVRTGKRGQ GAGKEWLLLK RRDGFADDDA
VLVESSVLSG LTVEELGAGP TRAQQAAAAL DALAAPARRL RVDQVAPMLC ELADGPFSDP
DWVYELKYDG YRMLAGIADG EVSLRLRSGR DATALFPEIV RALRRWPLAD AVLDGEVVAL
DEAGRPVFQR LQPRNRPAGA DEIERAAALA PVSYAVFDLL ACEGRDLRAL PLLARKQVLA
PLVPARGPVR YADHVEAQGE AFFDQVVAHG LEGVVAKRAS SSYQGRRSDE WRKIRQIRHG
RFVIVGTTSP RGGRAGFGSL HLAAWDHGWV YVGRVGTGFD ARALREIAAR LEALPRWRPS
FPAPSSPGRR DRWLAPTLVC EVGYQDVSDD GRLRLPRFVG LCPEVAPEDC PPPRSARALA
DARASGFATA TADADADADA EDTDAVRQAA ENPAGAREPA ASGADQDGID DRAPRGQVSN
PDKLYFPAGA GRRAHSKGAL VAYYRAVAPW MLPYLRDRPL ALVRFPEGIE GPSFFQKDAP
AWVPAWLRTE TLWSPQAQRT LRYIICDSED ALAFVANLGA IAVHTWSARI GALGRPDWAI
LDLDPKGAPF VHVVEIARAL RALCRALDLA CFVKTSGATG LHVLIPLGGS CTHEQARTLA
QLLAQLVCAE HPAIATTARP LAARGGRVYI DCVQNGQGRL LVAPLSVRAR PGAPVSMPLR
WRELSPKLDP ARFTIDKAVA RLRRMDPEPF AGLLDTRPDL ARALALLEER LGLSRG
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