Gene Hoch_3253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_3253 
Symbol 
ID8545641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp4484562 
End bp4486832 
Gene Length2271 bp 
Protein Length756 aa 
Translation table11 
GC content71% 
IMG OID646387920 
ProductCheA signal transduction histidine kinase 
Protein accessionYP_003267648 
Protein GI262196439 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0643] Chemotaxis protein histidine kinase and related kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0312912 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0661628 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAGCG ACAAGCTCCT CGCCGGGCTG CGCGCGGTCT TCCGCGATGA ACTCGAAGAC 
CACCTGACCA CGCTCGAGCG CGAGACCGTG ACCCTGGCGC GCGCCGAGAC CACGCCCGAG
ACCATCTACG CCGCGGTGCG CGAGATCTTC CGCGCGGTGC ACAGCCTCAA GGGCGCTGCC
CGGGCCGTGG ACTATCCCGT GCTCGAGCGC ATCTGCCACT CGCTCGAGAG CAGCCTGGTC
CATATCCGCG CGCCCAGCCC CGACATCAAC GCCGAGTCGG TGCGCGTGGC CACCGAGCGC
ACCATGGCCG CGATCCTGTC GTGGAGCGCC GAGCACCTCA ACAAGACCGT GCGCTTCCAG
GCGCCGGGCG CGGCAACCGA AGCGCCCGCC GCGGCCGCCG CGACCACAGC GCCGCCGCGC
GGGCCAGCGC CGGCTCCCCC GCCCCGGAGT GAGCCGACCC CGGCGCCCGC GCCCGCGCCT
GCCCCCGCGC CCGCGTCCGG CAGCGCGCCC CGGCGCTCGA CCACGCTGCC GCCGGCCGAC
GAGGCGCCGA CCGGGCGCTC GAGCACGCAC ACCACGGATA CCGTCCGGGT GTCCGCCGAA
CGCGTCGGCC GCATCCTGGT ACAGACCGAG GAGCTGGTCG CGCTGTCGGT GCGCGGCGCC
CGCGCGCGCA CGGGCTTTGC CTCGTTTGGC GACACCCTGG CCGAAATGCG CCGGCAGCTC
GACATCGCCC GGCGCGCGGT GCGCCACCAG CCGGTCGCGG TCAGGGCCAT CGAGAGCGCC
CAGTCGGCGG TGCAGACCCT GTCGGTGTGG TCGCTCGAGG CGCGCCGCCG ACACACCGTC
GACTGGGACG ACGCGGTGAC CAAATCCGCG GCCCTGGCCC ACGATACCCG GCTGTTGCGC
CTGGTGCGCG TCGACAGCCT GCGGCCGGTG CTCGAGCGCA CGGTCATCGA GACCGCGCGC
AGCCTGGGCA AGGTGGTCAG CTTCGCGTTC GAGGGCGGCG ACGCGGAGTT CGACCGCCGC
GTCATCGAGC GCCTGCGCGA CCCGCTCATC CAGATGATGC GCAACGCCTG CGACCACGGC
ATCGAGTCCG CCGAGCAGCG CACCCGGGCC GGCAAAGCGC CGGCCGGACG CATCGCGTTC
AGCGCCCGCA CGAGCGGCGC CGACGCGGTC ATCACAGTGC GCGACGACGG CCGCGGCATC
GACGTCGAGC GCGTGCGCCG CGCCGCCCGC AGCCGCGGCT ACGCGGTGGA CGAAAACGAC
GAGCAGGCGC TTCTCGACCT GGTCCTGCGC CCGGGCTTCA GCACCAAGCG CGAGGCCTCC
GAGACCTCGG GGCGCGGCAT CGGCCTCGAC ATCGTGCGCA AGCGCGTGGC CGAGATGCAG
GGCCGGCTCA CCATCGAGAC CAAGCCCGGC GAGGGCACCG CCATCCACCT GCGCGTGCCC
GGCGACCTCG GCATCATGCG CGGCCTCTTG GTCCATGCCC GCGGCTCCTC CTTCATTCTG
GTACAGAGCG CCATCGAGAC CATGCTGCGC GTGCGTCCCG ACGACGAGCA GACCATCGGC
GGCAAACGCC ATATCCACTA TCAGGGCACG GCGATTCCGC TCACCGATCT CGGCACCGCC
CTGGGCCTGG CCGGACGCGG CCGCAACGAC GAGGCCGAGG CGCGTCCCTG CGTGGTCCTG
GCCTCGGCCG AGCGCCGCGT GGCGTTCTTG GTCGACGCCT TCGGCGACCT GCGCGACGTG
GTCATCAAAC CGCTGGGCCC GCGCGTGCGG CGGGCCGGTT TCGTCACCGG CGCGGCCCTG
CTCGGCGACG GCGAGATCGC CTGCGTTCTC AACGCCTTCG ACCTGGCCGA AGTCAGCCGT
GCGGAAAACC AGGAGATGGT GCGCGAACAA AGCGTCGAGC GCCAATACAC CTTGTTGGTC
GTCGATGACT CGGTAACCAC GCGCCAGCTC TTGCGCTCGA TCCTCGAGGC GGCTGGCTAC
CAATGCGAGG TCGCGCCCGA TGGCGAAGCG GCCTGGAGGC GGCTGCTCAT GGGCGATCCC
ATCGATCTCA TCGTCTCGGA CATAGAGATG CCCAGGCTCG ACGGATTTCA GCTGCTTTCG
CGCGTGCGCT CGTCGCCAAA AACCGCCAAA TTACCATTCG TGTTGGTCAC GGCGTTATCC
GACGACGGCG ACCGGCGTCG GGCCCTCGAG CTCGGCGCCG ACGCCTACGA GATCAAAGGC
CATTTTGATC AAGACGCGCT GCTCGACACC ATCGAGGAGC TACTGCCATG A
 
Protein sequence
MDSDKLLAGL RAVFRDELED HLTTLERETV TLARAETTPE TIYAAVREIF RAVHSLKGAA 
RAVDYPVLER ICHSLESSLV HIRAPSPDIN AESVRVATER TMAAILSWSA EHLNKTVRFQ
APGAATEAPA AAAATTAPPR GPAPAPPPRS EPTPAPAPAP APAPASGSAP RRSTTLPPAD
EAPTGRSSTH TTDTVRVSAE RVGRILVQTE ELVALSVRGA RARTGFASFG DTLAEMRRQL
DIARRAVRHQ PVAVRAIESA QSAVQTLSVW SLEARRRHTV DWDDAVTKSA ALAHDTRLLR
LVRVDSLRPV LERTVIETAR SLGKVVSFAF EGGDAEFDRR VIERLRDPLI QMMRNACDHG
IESAEQRTRA GKAPAGRIAF SARTSGADAV ITVRDDGRGI DVERVRRAAR SRGYAVDEND
EQALLDLVLR PGFSTKREAS ETSGRGIGLD IVRKRVAEMQ GRLTIETKPG EGTAIHLRVP
GDLGIMRGLL VHARGSSFIL VQSAIETMLR VRPDDEQTIG GKRHIHYQGT AIPLTDLGTA
LGLAGRGRND EAEARPCVVL ASAERRVAFL VDAFGDLRDV VIKPLGPRVR RAGFVTGAAL
LGDGEIACVL NAFDLAEVSR AENQEMVREQ SVERQYTLLV VDDSVTTRQL LRSILEAAGY
QCEVAPDGEA AWRRLLMGDP IDLIVSDIEM PRLDGFQLLS RVRSSPKTAK LPFVLVTALS
DDGDRRRALE LGADAYEIKG HFDQDALLDT IEELLP