| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3171 |
|---|
| Symbol | |
|---|
| ID | 8545559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 4365676 |
|---|
| End bp | 4368129 |
|---|
| Gene Length | 2454 bp |
|---|
| Protein Length | 817 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 646387838 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_003267566 |
|---|
| Protein GI | 262196357 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4581] Superfamily II RNA helicase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.106755 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.84372 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCAGCC CGTCTACACC GCCCCCGCCC CCGTCTCCGA GCGCGCCGAT CGCGCTGCCC
ACCGCCGTCG GTAAAGACGG CGCGCCGGCC AAGCCATCGG CCGCCGACAT CGAGCTGGCC
TTCTACGAGC ACTTCTTCTT CTCGCGCGGC TTCGAGCCCT ACCCCGTGCA GGAAGAGGCC
TTCTCGCACA TCTTCGCCGG CCACAGCACC CTGGTCACCG TGCCCACCGG CACCGGCAAG
ACCCTGATGG CCAAGGCCGC CATGTACAAA TGCCTGGCGC TGGGCCAGAA GGCCATCTAC
ACCACGCCGC TGCGCGCGCT CACCGAGGAG AAGTACCGCG AGCTGTGCGA GGACTTCGGC
GAGGACAACG TCGGCTTCGC CACCGGCGAC TTCAAACAGA ATCGCGACGC GCCGATTCAA
GTCGAGGTCG CCGAGATCCT GTGGAACCGC ATCTTCGGCG ACCGCGTCAA CGCGCCCGCG
GACGCGGTCA TCATGGACGA GGGCCACTAC TTCAACGACA ACCAGCGCGG CTACGTGTGG
GAGCAGTCGA TCATCGGCCT CGACCCGCGC ACCCAGCTGG TCATGCTCTC GGCCACCGTC
GGCCACCCGC GGCGCTTCTG CCAGTGGGTC GAGGCCACCC GCCGCATCCC CTTGGAGTTG
GTCGAGTCGC GCGAGCGCCG CGTGCCGCTC AAGCACGAGT TTCGCGAGGA CTACCTCATC
GAGGTCGTGC GCGATCTCGG CGCCAAGGGC GACGTGCCCG CCATCGTGTT CGTGTTCGGC
CGCGAGCGCT GCTTCGAGGT CGCGCGCCTG CTCAAGAGCT GCCGGCGCTT CACCACCGAC
GAGGAGAAGG CCACCATCGA GGCCCGCTGC GCCGACTACC TGCTCGACGG CGGCGCCTCG
CAGGAGCTGT TGCCGCTGCT GGTCCACGGC ATCGGCATCC ACCACGCCGG CATCCTGCCG
CGCTACAAGC GCCTGGTCGA AGAGCTGGCG CTCGAGCGGC TGATCAAGTT CGTCGTGTGC
ACCGAGACCA TCGCCGCCGG CATCAACCTG CCGGCGCGCA CCGTGGTCTT CCCCTCGCTG
CGCAAGCACG TGCGCGGCCA GTCGCGCATC GTCGTGCCCG CCGAGTTCCA CCAGATGGCC
GGGCGCGCCG GCCGGCCGCA GTTCGACGAC GAGGGTCTGG CCATCGTGCT GGCGCCCGAG
GAGGTGGTCC AGGACATCCG CAAAGAGGTC AAGAACGCCA AGAAGAAGGG CTACCGCTTC
GACGAGGCCA AGATCCGCAA GAGCGCCTAC GCCCGCGCCC ACGCCGACGC CCAGCGCCGC
GGCGAGGTGC TGTGGGACGC CAAGACCCAC GAGGATCTGG TCACGGGCGA GCCCGCCGCG
CTGCGCAGCC GCACCCAGAT CACGGCCGAG CAGGTGCTCG CCATCGGCCT GCCCGACCTC
ACCCAGCACA GCCTGCCCGG CTCCGAGCTC CTGGTCAGCG CGTCCGAGAA CGACAGCGCC
GGCGAGGCCC AGCCCGACGC CGGCAAGGCC GCCGAGCCCG CAGCCGAGCC CGCGCCGACC
ACGGGCTTTG GCGCCATCCT CGCCGCCGCC ACCCAGAGCG ACGAGGAGCG CGCCGCCGCC
GAGGCCGAAA AAGCCGCCGA GGCCAAGCGC GCGGCCGAGG CCGAGAGGGC CGCCCTGGCC
GCCGCCGAAG CCGAAGCCGA GGCCGCACGC GCCGCCGCGC GCGCCGCCGC CGAGGCCGAC
CTGCCCGCGT ACATGCGGCT CAATATCGTC ACCGTGGTCG AAAACCTGCT GCTCTCCGAC
CGCGCCAAGC TGCAGATGCA CAAGCTGCTC GCCCAGGTCA CCGACAACCT GCGCGCCGTC
GGCGTCATCG ACGAGCACGG CCAGCAGGTC GCCGGCGATC TCATCGGCAA GCTGCACGGC
ATGGATGGCC TGTTCGTCTA CTACGTGCTG ATGAGCGAGC AGCTCGACTA CGAGGACTGC
CGCGCGCTCA TCGAGTACCT GGTCGACCAC AACGTCATCC AGAAACAGCT CGACCGCAAA
GAGTACGAGA AGCGCCGCGA GTGGATCCGC GAGCGCCTGC GCGAGCGCCG CCGCGACAAC
CCGCTGGTGT CGTGGGAGGA CGTCGAAGAG GAGTACGAGC GCCAGTTCCC GCGCGAGCTC
ACCGCGGTCG AGCTGGTGCA CCAGCGCTTC TCGGCCGAGG TGCCGCACCC GCAGCTCCAC
GGCGGCAAGA AGTTCAAAGA CATCTGGGCG CGCATCGAGG ACGAGCAGCT CAGCTTCCTC
GACTTCGTCG AGAACCATCA CCTGCAGCAC GAAGAGGGCA GCTTGTTCTC GTACCTGGTG
CGGGTGATGA ACTTCGCCAA GAACCTGGGC GAGGCCACCA TGATGGACCA GTTCACGAAC
ATCGAAGAGC GCGTGCGGAG CTGCCTCTCG GTGGTCGACA TGCGCATGAT CTGA
|
|---|
| Protein sequence | MSSPSTPPPP PSPSAPIALP TAVGKDGAPA KPSAADIELA FYEHFFFSRG FEPYPVQEEA
FSHIFAGHST LVTVPTGTGK TLMAKAAMYK CLALGQKAIY TTPLRALTEE KYRELCEDFG
EDNVGFATGD FKQNRDAPIQ VEVAEILWNR IFGDRVNAPA DAVIMDEGHY FNDNQRGYVW
EQSIIGLDPR TQLVMLSATV GHPRRFCQWV EATRRIPLEL VESRERRVPL KHEFREDYLI
EVVRDLGAKG DVPAIVFVFG RERCFEVARL LKSCRRFTTD EEKATIEARC ADYLLDGGAS
QELLPLLVHG IGIHHAGILP RYKRLVEELA LERLIKFVVC TETIAAGINL PARTVVFPSL
RKHVRGQSRI VVPAEFHQMA GRAGRPQFDD EGLAIVLAPE EVVQDIRKEV KNAKKKGYRF
DEAKIRKSAY ARAHADAQRR GEVLWDAKTH EDLVTGEPAA LRSRTQITAE QVLAIGLPDL
TQHSLPGSEL LVSASENDSA GEAQPDAGKA AEPAAEPAPT TGFGAILAAA TQSDEERAAA
EAEKAAEAKR AAEAERAALA AAEAEAEAAR AAARAAAEAD LPAYMRLNIV TVVENLLLSD
RAKLQMHKLL AQVTDNLRAV GVIDEHGQQV AGDLIGKLHG MDGLFVYYVL MSEQLDYEDC
RALIEYLVDH NVIQKQLDRK EYEKRREWIR ERLRERRRDN PLVSWEDVEE EYERQFPREL
TAVELVHQRF SAEVPHPQLH GGKKFKDIWA RIEDEQLSFL DFVENHHLQH EEGSLFSYLV
RVMNFAKNLG EATMMDQFTN IEERVRSCLS VVDMRMI
|
|---|
| |