| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3169 |
|---|
| Symbol | |
|---|
| ID | 8545557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 4364584 |
|---|
| End bp | 4365138 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 646387836 |
|---|
| Product | bifunctional deaminase-reductase domain protein |
|---|
| Protein accession | YP_003267564 |
|---|
| Protein GI | 262196355 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0262] Dihydrofolate reductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0042586 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCA GGCGCAGGTG CTTTATCGCG TGTTCGCTGG ATGGGTTTAT CGCGGGGCCG
GGGGACGATC TCGACTGGCT GCCTGCGCCC GATGTCTCGC CGAGCGGCGA GGAGCTCGAC
GAGGGTGGGT TTCGCGGCTT CCTGGCGCAG ATCGGCGCGC TGCTCATGGG CCGCCGCACC
TACGAGGTGG TCGCGGCGAT GGATGGCGAC TGGCCGTACG GAAACCGGCC GGTGCTGGTG
GCCACGCATC GGCCGCTGGA CAATGCGCCG CGCACGGTGC ACGCGGTCTC GGGCGATATC
GCCAGCATGG TGGAGACCGC GTGCCAGGCG GCCGGCGAGC GCGACGTGTA TATCGATGGC
GGCGAGCTGC TGCGCCAGGC GCTCGATGCC GAGCTGCTCG ACGAGCTGGT GGTGACCGTG
GTGCCGGTGG TGCTGGGGCA GGGCACGCCG CTGTTCGCCG GGGCCGAGCG CCGCCGCGAG
CTGGTGCTGG TGTCGAGCCG CGTGTTCGGC GCCGGCCTGG TGCAGCTCCG CTACCGGCCG
GTGTCCGCGG GCTGA
|
|---|
| Protein sequence | METRRRCFIA CSLDGFIAGP GDDLDWLPAP DVSPSGEELD EGGFRGFLAQ IGALLMGRRT
YEVVAAMDGD WPYGNRPVLV ATHRPLDNAP RTVHAVSGDI ASMVETACQA AGERDVYIDG
GELLRQALDA ELLDELVVTV VPVVLGQGTP LFAGAERRRE LVLVSSRVFG AGLVQLRYRP
VSAG
|
|---|
| |