| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2420 |
|---|
| Symbol | |
|---|
| ID | 8544806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 3347356 |
|---|
| End bp | 3349026 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 646387119 |
|---|
| Product | cytochrome c oxidase, subunit I |
|---|
| Protein accession | YP_003266850 |
|---|
| Protein GI | 262195641 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.040842 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.534979 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACCA CTACCGCTAA GGAACCGAAT TACCTCGAGG TAAAGCGCGG GTTGATGTCG
TGGCTCGTCA CGCTCGATCA CAAGCGGATC GGGGTCATGT ACCTCATCGG TATCCTGACC
GCGCTGCTCA TCGGCGGCCT GTTCGCGCTG CTGGTGCGTA TCGAGCTATT CTCGCCCGGC
GAGCTGTTTT CGCCCGATCA GTACAACCAG ATCTTCACTC TGCACGGCGC GGTGATGGTG
TTCCTGGTCA TCATTCCAGG ACTGCCGGCC GCGCTGGGTA ACTTCATCTT ACCGATTCAG
CTCGGCGCAC CCGATGTCGC GTTCCCGCGC ATCAACCTGT CGAGCTTCTA TCTGTGGTGC
ACGGGCGCCG CGCTGCTGGT GGCGACCATC GTCGTCGGCG CAGTGGACAC GGGCTGGACC
TTCTACACGC CGTACAGCAT GACCACCGAC AAGGGCACAG CCGTGATCCT GTCGGTGCTG
GGCGTGTTCC TGCTCGGCTT CAGCTCGATC TTCACCGGTC TCAACTTCCT GGTGACGATC
CACAAGTTCC GCGCCAAGGG CATGGGCTGG TTCAACATGC CGCTCAACCT GTGGGCGCTG
TACGCCACCG CCGTCATCCA GGTGCTGGCC ACGCCGGTGC TGGGTATCAC CGTGCTGCTG
CTCTTCGTCG AGAAGGTCAT GCACATCGGT ATCTTCGACC CCAACCTCGG CGGCGACCCG
GTGCTGTTCC AGCACTTCTT CTGGTTCTAC TCGCACCCGG CCGTGTACAT CATGATCATC
CCGGCCATGG GCGTGATCTC CGAGATCATC ACGACCTTCT CGCGCAAGCA CATCTTCGGC
TATCGCTTCA TCGCGTACTC GAGCATCTCG CTGGCCCTGC TCAGCTTCCT GGTCTGGGGC
CATCACATGT TCGTGAGCGG CCAGTCGAAG ATGGCGGCCA TGATCTTCTC GGCGCTCACC
TTCACGGTCG GCATACCGTC GGCCATCAAG GTGTTCAACT GGACCGCCAC CCTGTACAAG
GGCGAGATCT ATCTCAAGAC GCCGATGTTG TACGCGCTGT CGTTCGTCCT GCTGTTCACG
ATCGGCGGCT TGACCGGCTT GTTCCTCGGC ATCTTGAGCG TGGACGTGCA CCTGCACGAC
ACCTACTTCG TCGTCGCTCA CTTCCACTAC GTGATGATGG GCTCGACCCT GGTCGCCTTC
CTGGCGGCGC TTCACTACTG GTTCCCGAAG ATGAGCGGCA AGATGTACCC GGAGAAGCTG
GCTCAGATCT GCTCGGTGTT CGTGTTCATC GGCTTCAACC TCACCTTCCT GCCGCAGTTC
GTGATGGGCG CCCGCGGCAT GCCGCGCCGC TACTGGGACT ACGACCCCGA GTTCACGCTG
ATGCACCGGC TCTCGACCAT CGGCGCGCTG ATCCTCGGCA TCACGCTGTT CATCGTGGTG
GTGTACCTCG CCATCGCGGC GCTGCGCGGC AAAGTGAAGG CCGCCGACAA TCCCTGGGGC
GCGTCCACCC TCGAGTGGCA GACGACCTCG CCGCCGCCGC TGTACAACTT CCACGAGGCG
CCCGAGAAGC CGCTGCTGTA CCACTACGAG GAATTCGAGT ACGACGAGTC CATCGACGGG
TATGTCTACC GGCCCAACGA AGACCGCCAC ATCCCGATCG CGCATCACTA A
|
|---|
| Protein sequence | MSTTTAKEPN YLEVKRGLMS WLVTLDHKRI GVMYLIGILT ALLIGGLFAL LVRIELFSPG
ELFSPDQYNQ IFTLHGAVMV FLVIIPGLPA ALGNFILPIQ LGAPDVAFPR INLSSFYLWC
TGAALLVATI VVGAVDTGWT FYTPYSMTTD KGTAVILSVL GVFLLGFSSI FTGLNFLVTI
HKFRAKGMGW FNMPLNLWAL YATAVIQVLA TPVLGITVLL LFVEKVMHIG IFDPNLGGDP
VLFQHFFWFY SHPAVYIMII PAMGVISEII TTFSRKHIFG YRFIAYSSIS LALLSFLVWG
HHMFVSGQSK MAAMIFSALT FTVGIPSAIK VFNWTATLYK GEIYLKTPML YALSFVLLFT
IGGLTGLFLG ILSVDVHLHD TYFVVAHFHY VMMGSTLVAF LAALHYWFPK MSGKMYPEKL
AQICSVFVFI GFNLTFLPQF VMGARGMPRR YWDYDPEFTL MHRLSTIGAL ILGITLFIVV
VYLAIAALRG KVKAADNPWG ASTLEWQTTS PPPLYNFHEA PEKPLLYHYE EFEYDESIDG
YVYRPNEDRH IPIAHH
|
|---|
| |