Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_2260 |
Symbol | |
ID | 8544646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 3142761 |
End bp | 3143948 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 646386965 |
Product | integrase family protein |
Protein accession | YP_003266696 |
Protein GI | 262195487 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.46728 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0539974 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATGA ACCGAGACGC CGATACGAAC TGCGACTGGC AGCGCTGGCT GGCGCGCTTC GATGACTACC TGCGCACCGA ACGCGGCGGC TCCGCGCACA CGCGCGCCGC CTACGGCCGC GACCTGGCCG AATTCGGCCG GGTGTACGAA GAACGCAGCG GCGCGCCGCC GGTGCCGGCA CAGGTGGCCG TGCTCGACAT CCGCGCCCAC CTGGCCGGGC TATACGAGCG CAACGACGCC GCCACCATGG CGCGCAAGCT GTCGGCGCTG CGCTCGTTCT TCGCCTTTTT GGTCCAGCGC GGCGCGCTCG ACAACAACCC GGCCCGCGGC GTGCGCAGCC CCAAGCGGCG CAAGGCGCTG CCGCGCGCGC TCGACGTGGA CGACGCCTTT CGCCTGATCG AAGCCCCGAC CCGCGCGCCC GCATCCGGCG CCGACGCGGC CGCCGCGTCC CCGGCCCGAA ACGTTGGCCG AAGCGGCGGC CGGAGCGCCA ACCGCGCCGG CGCTACCGGC ACCGCGAGCG CCGGCAAGAA CAAGCGGGCC AAGACCAGCC GCGAGCCGCT CAAGCTGCGC GATCGCGCCA TCGCCGAGGT GCTCTATGGC AGCGGCCTGC GCGTCGGCGA GTGCTGCGCG CTCGACCTCG ACGACATCGA CCGCGCGCGC CTGTCCTCGG CCCTGGTGCG CGTGCGCCGC GGCAAAGGCG GCAAAGAGCG CATCGTGCCG CTCGGCCGCC AGGCGGTGGC CGCGCTCGAC GCCTACCTGA ACGTGCGCCC GCTGCTGCGC GATCCCAAGA CCGGCGCCCG CGATCCCGCG GCCCTGTTCC TCAGCTACCG CGGCACCCGC TTAACCACCC GCTCGGTGCA GCGCATGATC GGACGCAACG CCCAAGAAGT CGGCGCCTAC GAGGCCACAC CGCACGCGCT GCGCCACTCC TTCGCCACCC ACTTGCTCGA CAGCGGCGTC GATCTCCGCG CCATCCAGGA GCTTCTGGGC CACGCCAGCT TGGCCTCGAC ACAAATCTAC ACCAAAGTGT CTCTCGACCA TTTGATGAAC GTCTACGACG CTAGCCATCC GCGCGCCCGC GCGTCCTCGC CCGGCACCGC CGCGGCCCCC GCCGCCGCCG ATGGACCCCC GGCCGACGCC GCGTCCGGGT CCGCGTCCGG TCCGCGAAAG AGTCCCCCTG ATACTTGA
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Protein sequence | MDMNRDADTN CDWQRWLARF DDYLRTERGG SAHTRAAYGR DLAEFGRVYE ERSGAPPVPA QVAVLDIRAH LAGLYERNDA ATMARKLSAL RSFFAFLVQR GALDNNPARG VRSPKRRKAL PRALDVDDAF RLIEAPTRAP ASGADAAAAS PARNVGRSGG RSANRAGATG TASAGKNKRA KTSREPLKLR DRAIAEVLYG SGLRVGECCA LDLDDIDRAR LSSALVRVRR GKGGKERIVP LGRQAVAALD AYLNVRPLLR DPKTGARDPA ALFLSYRGTR LTTRSVQRMI GRNAQEVGAY EATPHALRHS FATHLLDSGV DLRAIQELLG HASLASTQIY TKVSLDHLMN VYDASHPRAR ASSPGTAAAP AAADGPPADA ASGSASGPRK SPPDT
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