| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2018 |
|---|
| Symbol | |
|---|
| ID | 8544400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 2786791 |
|---|
| End bp | 2788068 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 646386721 |
|---|
| Product | isochorismate synthase |
|---|
| Protein accession | YP_003266456 |
|---|
| Protein GI | 262195247 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1169] Isochorismate synthase |
|---|
| TIGRFAM ID | [TIGR00543] isochorismate synthases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.577572 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACA TGAACAACGT GTTTCCGAGC CAAAGCGCGC AGCCTGATGC CGCGCTGGCG
ATGCCGCATG CGCTGACGCC TCCGACCCGG TCCGCGGCCG AGTTGTTGGC CGCCTACGAG
ACCTCGTCGG CATTCTTCTT CGCCTCGCCC ACGCGCACCC TGCACGCGCC CGATGTCTAC
GCCGTGATGG TGCCGCAGGC GCCCACGGCC GTGCGCAGTT TGGCCGACCG GGTGGACGAT
CTCCTGGCGG AGTCGCAGCG CTTTGGCCGC GAGAGCGCGA TGGTGGTCGG CGCGGTGCCC
TTCGACCCGC AGGCGCCCGC GCACCTGGTG GTGCCGATGA CGCTCGACAG CGCCGGGCCG
TTGAGGCTCG ACCAGGCCGC GCCCACCCAG CGCGCGCTGA CCGCGGGCTT TCGCATGCAC
CCCTGTCCCG AGCCCGAGGG CTACGCCCGC GGCGTGGCGC AGGCGCTCGG CCTGCTCGCG
CGCGAAGAAC TGCGCAAGGT GGTACTCGCG CGCATGCTCG AGCTCGAGCT GTCGCGGCCG
CTGGACGTGC CCGCGCTGCT GCGGCGCCTG GCCGGGCAGA ACCCGGGCGG CTATGTGTTT
GCGCTCGACC TGCCGGCGCT CGAGGACGCG CCCGCGGGCA CGCGCCGCAG CCTGGTTGGC
GCCAGCCCCG AGCTGCTGGT GTCGCGCAGC GGCAACACCG TGGTCGCCAA TCCGCTGGCG
GGTTCGGCTG CGCGCAGCCT CGATCCCGAG GAAGACCAGC GCCGCGCCAA GGCGCTGCTG
GCGTCCGAAA AAGACCGCGC CGAGCACGCC TTCGTGATCG AGGACGTGGT CGCGCGCCTG
CGCCCCTTCT GCCGTTTCAT CGAGGTGCCG GCCGCGCCCT CGCTGATCCA CACCCAGACC
ATGTGGCATC TCTCGACCCG CATCACGGCC GAGCTGCGCG AGCCCGCCGC GTCCTCGCTG
CGGCTGGCCT CGGCGCTGCA TCCCACGCCG GCCGTGTGCG GCTCGCCCAC CGAGCTCGCG
CGCTCCACCA TCGCGGCCAT CGAGCCCTTC GAGCGCGGCT TCTTCACCGG CATGGTCGGC
TGGTGCGACG CCAGCGGCGA CGGCGAGTGG GTGGTGACCA TCCGCTGCGC CGACGTTACC
GACCAGGCGG TCAAACTCTA TGCCGGTGCT GGAATCGTCG CCGCCTCCGA GCCCGAGCGC
GAGCTCGCCG AGACCTCGGC CAAGCTGCGC ACGATGCTCA ACGCGCTCGG TATCGACGAC
ATTCCCGAGG TGATGTAA
|
|---|
| Protein sequence | MDNMNNVFPS QSAQPDAALA MPHALTPPTR SAAELLAAYE TSSAFFFASP TRTLHAPDVY
AVMVPQAPTA VRSLADRVDD LLAESQRFGR ESAMVVGAVP FDPQAPAHLV VPMTLDSAGP
LRLDQAAPTQ RALTAGFRMH PCPEPEGYAR GVAQALGLLA REELRKVVLA RMLELELSRP
LDVPALLRRL AGQNPGGYVF ALDLPALEDA PAGTRRSLVG ASPELLVSRS GNTVVANPLA
GSAARSLDPE EDQRRAKALL ASEKDRAEHA FVIEDVVARL RPFCRFIEVP AAPSLIHTQT
MWHLSTRITA ELREPAASSL RLASALHPTP AVCGSPTELA RSTIAAIEPF ERGFFTGMVG
WCDASGDGEW VVTIRCADVT DQAVKLYAGA GIVAASEPER ELAETSAKLR TMLNALGIDD
IPEVM
|
|---|
| |