| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1944 |
|---|
| Symbol | |
|---|
| ID | 8544326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 2672798 |
|---|
| End bp | 2674357 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 646386648 |
|---|
| Product | AbgT putative transporter |
|---|
| Protein accession | YP_003266383 |
|---|
| Protein GI | 262195174 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2978] Putative p-aminobenzoyl-glutamate transporter |
|---|
| TIGRFAM ID | [TIGR00819] p-Aminobenzoyl-glutamate transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.432903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00626673 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACT CCCCATCGAC GCCGCGCTCG AATGAGACGC CGCGTCTCGC CGACAAAGTC
CTCTCGTGGA TCGAGGCCGC CGGCAACAAG CTGCCCGATC CCGCCGTCAT CTTCGTCATC
GCCATGCTGC TGGTGTGGAT CGCCTCGGCG CTGCTCGACG GCCACGCCTT CGAGGTGCCG
GCCAAGGACG GCATCAAGGC CAACCAGATC GTCAGCCAGC TCGGCGCCGA AGCGCTCACC
ACCTTCTTCG CCGAGATGGT GCACACCTTC ACCAGCTTCC ACCCGCTCGG CGTGGTCCTC
GTCGCCCTGC TCGGCGTCGG CGTGGCGGAA TCCTCGGGCT TCATCAACGC CTGCCTCAAG
GGCCTGCTCA GCTTCACGCC CAAGGCGCTG CTCACGCCCA TGGTCATCTT CGTCGGCATC
CTCAGCCACA CCGCGGCCGA CGCCGGTTAC GTGCTGGTCA TCCCGCTCGG CGGCGTCATC
TTCTACGCCG CCGGCCGCCA TCCATTGGCC GGCATCGCGG CCGCCTTCGC CGGCGTCTCG
GGCGGCTTCA GCGCCAACCC CATCCCCTCG GCCATCGACC CGCTGCTGCA GGGCCTCACC
CAGGAGGCCG CCGGCATCCT CGACCCCGCG CGCGAGGTCA ACCCGCTGTG CAACTGGTGG
TTCATGGCCG CCTCGAGCAT CCTCATCGTC GGCCTCGGCT GGCTGCTCAC CGACAAGGTC
GTCGAGCCGC GCCTCCGCGC CAACGCCGAG ATCGACGGCG ACCCCGAGGA CATGCCGACC
ATGGAGTCGA TGACCTCGGA CGAGCGCCGC GGCATGTGGG CCGGGCTCGT CGCCATGTTC
GCCGGCGTCG CCACCCTGGT GCTGCTGTGC CTGCCCAGCG ACTCGCCGCT GCGCGCGCCC
GACGGCGATC TGACCGCGTT CCAGGCGCCG CTGATGCAGA TGATCGTGCC GCTGATCTTC
CTGGTCTTCC TGGTCCCCGG CATCGTCCAC GGCTACGTGT CCAAGACCTT CGAGAGCCAC
CGCGACATCA TCAAGGGCAT GAGCAAGACC ATGAGCACCA TGGGCTACTA CATGGTCATG
GCCTTCTTCG CCTCGCTGTT CATCTACTCG TTCGGCAAGT CGCAGATCGG CGCGCTGCTG
GCGGTCGAGG GCGCCAACAT CCTGCGCAGC CTGGCCCTGC CCGGCGAGGT GACGCTGTTC
GGCATCGTCC TCTTGTGCGC GGCCGTCAAC CTGCTCATCG GCTCGGCCTC GGCCAAGTGG
GCGCTGCTGG CGCCGATCTT CGTGCCCATG CTCATGCAGC TCGGCATCTC GCCCGAGCTC
ACCCAGGCCG CGTACCGCGT CGGCGACTCG ACCACCAACA TCATCACGCC GCTGATGCCG
TACTTCCCGC TGGTGGTCGC GTTCTCGCAG CGCTACGTCA AGAAGACCGG TATCGGCACG
CTCACGGCCG CGATGCTGCC GTACTCGATC ACCTTCCTGA TCGCCTGGAG CGTGTTCCTG
GTGGCGTTCT GGCTGCTCGG CATCCCGCTC GGCATCCAGG GCGTGTACGC CTACCCCTGA
|
|---|
| Protein sequence | MSDSPSTPRS NETPRLADKV LSWIEAAGNK LPDPAVIFVI AMLLVWIASA LLDGHAFEVP
AKDGIKANQI VSQLGAEALT TFFAEMVHTF TSFHPLGVVL VALLGVGVAE SSGFINACLK
GLLSFTPKAL LTPMVIFVGI LSHTAADAGY VLVIPLGGVI FYAAGRHPLA GIAAAFAGVS
GGFSANPIPS AIDPLLQGLT QEAAGILDPA REVNPLCNWW FMAASSILIV GLGWLLTDKV
VEPRLRANAE IDGDPEDMPT MESMTSDERR GMWAGLVAMF AGVATLVLLC LPSDSPLRAP
DGDLTAFQAP LMQMIVPLIF LVFLVPGIVH GYVSKTFESH RDIIKGMSKT MSTMGYYMVM
AFFASLFIYS FGKSQIGALL AVEGANILRS LALPGEVTLF GIVLLCAAVN LLIGSASAKW
ALLAPIFVPM LMQLGISPEL TQAAYRVGDS TTNIITPLMP YFPLVVAFSQ RYVKKTGIGT
LTAAMLPYSI TFLIAWSVFL VAFWLLGIPL GIQGVYAYP
|
|---|
| |