Gene Hoch_1845 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_1845 
Symbol 
ID8544227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp2542105 
End bp2543619 
Gene Length1515 bp 
Protein Length504 aa 
Translation table11 
GC content68% 
IMG OID646386551 
Productamino acid/peptide transporter 
Protein accessionYP_003266286 
Protein GI262195077 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3104] Dipeptide/tripeptide permease 
TIGRFAM ID[TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.241988 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTACGA AACAGCATGA CGAGCCCGCG ATCGAGGGCT TGGCCGAGGC CGGGCAGGGA 
CCGGCGCACA CCGTCGATAG CGGGACATTC CTCGGCCATC CCAAGGGCCT GTGGATCATC
TTCCTCACCG AGATGTGGGA GCGCTTCAGC TACTACGGCA TGCGCGCCCT CTTGGTGCTG
TACCTGGTGG CCAAGACCTC GGGCGAAAAC CCCGGCTTTG GCTGGAGCGA CGCCGACGCC
TCCACCCTCT ACGGCTTCTA CACCGGCGCC GTGTACCTCA CGCCGCTGCT CGGAGGCCTC
CTCGCCGACC GCATTCTCGG CACCCATCGC TCCATCGTGC TCGGCTCGTG GATCATGGCC
GCCGGCCACG TGTGCCTGGC GTTTACCGAG TTCTTCAGCG GCGGCAGCGC CGAGGTCTTC
ACCTTCGACA CCGCGCCCGG GGCGGTGGGC TGCTTCGTCC TCGGACTGGC CCTGATCGTC
ATCGGCACCG GCTTCTTCAA GCCCTGCGCC TCGGCCATGG TCGGCCAGCT CTACGGCGAC
GAGGATCCGC GCCGCGATTC CGCGTTCACC ATCTTCTACA TGGGCGTCAA CGTCGGCGCC
CTGCTCGCGC CTCTGGTCGC CGGTTCGCTG GGCGAGCAGG TGGGCTGGCA CTGGGGCTTC
GGCTCGGCCG CCGTCGGCAT GATGGCCGGC CTGGCCACCT ACTCGTGGCT GCGTCCGCGC
TACCTCGCCG GCATCGGCCT GGCGCCCAAG GACGCCGAGG CCGCGCCCCG CGCGCAGCTC
TCACCCGCGG CCAAGGCCGA GCAGGAGAAA GAGCAGCACG AGCAGACCCG GCCGCTCACC
AAGGTCGACC GCGATCGCCT CATCGTCGTC GTGATCATGT CGTTCTTCGC CATCGCCTTC
TGGCTCGGCT TCGAACAGGC GGGCTCGTCG CTCACGCTCT TCGCCTCCGA GCAGACCGAC
CGCAGGTTCT TCGGCTTGGA GTTTCCCGCG ACCTGGTATC AGGCCGCCAA CCCGGCCTTC
ATCCTGCTGC TCGGCCCGGC CTTCGCCGCC CTGTGGCCGT GGCTGGGCAA GCGCGGCCGG
CAGCCCTCGA CGCCGGTGAA ATTCGCCGCC GGCCTGCTCA TCCTCGGCCT CGGCTACCTG
GTGATGATAC CGGCAGCCCT CGAGGCCATG GGGGATGGTC TGGCTGGTTG GCACTGGTTG
GTGATGCTGT ATTTCATGCA TACAGCCGGT GAGCTGTGCA TCTCGCCGGT GGCGCTGGCC
ATGGTCACGC GCCTGTCGCC GGCGCGTTTG GTGTCGCTGA TGATGGGCGT CTACTACGCG
ATGCTGGCGA TCGCCAACAT CTTGGCCGGC TGGGTGGCCG CCTCGTCGAC GACCATCGCC
GAGAGCGGCA CGATCAACAT CTTCGGCGGA CAGGCGGACT TTTTCCTGCT GCTGTTCTTG
GGCCCCTTCG GGGTCGGCGT GCTGGTCCTG CTGCTCTCGC CGCTGCTCAA GAAGCTGATG
CACGGCCGCC ACTGA
 
Protein sequence
MSTKQHDEPA IEGLAEAGQG PAHTVDSGTF LGHPKGLWII FLTEMWERFS YYGMRALLVL 
YLVAKTSGEN PGFGWSDADA STLYGFYTGA VYLTPLLGGL LADRILGTHR SIVLGSWIMA
AGHVCLAFTE FFSGGSAEVF TFDTAPGAVG CFVLGLALIV IGTGFFKPCA SAMVGQLYGD
EDPRRDSAFT IFYMGVNVGA LLAPLVAGSL GEQVGWHWGF GSAAVGMMAG LATYSWLRPR
YLAGIGLAPK DAEAAPRAQL SPAAKAEQEK EQHEQTRPLT KVDRDRLIVV VIMSFFAIAF
WLGFEQAGSS LTLFASEQTD RRFFGLEFPA TWYQAANPAF ILLLGPAFAA LWPWLGKRGR
QPSTPVKFAA GLLILGLGYL VMIPAALEAM GDGLAGWHWL VMLYFMHTAG ELCISPVALA
MVTRLSPARL VSLMMGVYYA MLAIANILAG WVAASSTTIA ESGTINIFGG QADFFLLLFL
GPFGVGVLVL LLSPLLKKLM HGRH