Gene Hoch_1710 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_1710 
Symbol 
ID8544092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp2325919 
End bp2327601 
Gene Length1683 bp 
Protein Length560 aa 
Translation table11 
GC content70% 
IMG OID646386418 
ProductSirA family protein 
Protein accessionYP_003266153 
Protein GI262194944 
COG category[S] Function unknown 
COG ID[COG2210] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0499089 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCCA GCACCAGTTC ACACGTGACC CATCTCGACC TTCGCGGCCT CAAATGTCCG 
GCCCCGGTGG TGTCCGCCAG CAAGGCGGTC AAGAAGCTCG AGGGCCGCAC CGCGGTGTTG
CACATCCTGG CCGACGATGA CGGCTTTGCC GCCGATCTCG AGGTCTGGTG CCGGGCCACC
CGGGCCGAGT TGCTCACCAT CGAGCGCTCC GAGGAGGGCA TCTTCGACGC CACCATCCGC
GTCAACGGAC ACCCGGACGA TAAAATCACC GCGCGCCTGC CCACGCCCAC CGCTCGCAGC
AGTCGGCCGG CCCTGGCCAC GCCGGCCGGC GGCACCAGCA CCGACGACGC GACCCCGGCC
GTGGAGCGCA CGAGCTTCGA CTTCCGCGGC AAGCGCTGCC CCGAGCCGAT CATCCTGCTG
GCCAAGGAGG TGCGTCAGCT CGGGGAGTCG GCCGAGTTCG AGGTGCTGGC CGACGACGAC
TCCTTCCCCA TGGATATCCG TAGCTGGTGC CGCAGCGCCA ACGCCACCCT GCTCGTGCTC
GACGAGCACA GCGGCAGCTA CCGCGCGCTC ATCCGCGCCA AGCCCCGGCC CGGCACCGAG
GGCAGCGAGA GCACCGTCAC CACGGCCGCG CCGCCGGTGG CTGAATCCGC GCGCCGCGCC
GCGCCCGCTC GCCGGCCGCT GCCGGTGTCG AGCGCGGTCA AGGTGCCGAA CATGGACGCC
ACCGAGACCG CGACCATGCC GATTTCGGCC ATCGCGGCGG CCGCCCAGAG CGAGACCCTG
GCCGCGCCGC CTGCACCTGC CCGCGCGGCG CCGACGGCCA GCGCCGAGCC GCGCATTCGC
GTCGATCTCT CGAGTATGCC GGCGGCCGTC GTGAGCGCGT ATCTCAGCTC GCTCAACCAC
ATGCAGGTGG AGCACGCCGA GGCCGAGGTC GAAGTCGAGA TTCTGGCCCG CTACGGCAGC
TTTGCCCAGG ATGTGGCCGT GTGGTGCTCG AAGTACGATC ACACCCTCAC GCGCATGAAC
ACCGAGTCCG ACCCGATGAG CGCGCGCGTG AGTCTGCGCG CGCCCGTGGA TCGCCCGGGC
CAGGCGAGCG GCGATGCGAT CGGTGAGGCG CGCGCAGCCC CGGCGACTTC GTCCGAGCGT
CCGACAGAGG CGCTGGTGCC GCTGAGCGAC GAGATGCGCG AGCTGGCGCT GGCCCGGCAG
CAGTGCACGC TGCTCGTGCT GCACAACGAT CTCGAGGCCG TGCTGGCCGC GCTCATGACC
GCCAACGCCG CGGCTTCCAA CGGCATGCAG GTGGTGCTTT TCTTCGCCTT CTGGGGCGTC
AACGTGCTGC GCGCCGACAA GCCGCGCAAG GACGTGCCCG CCGAGAAGGT GTCGCTGATG
CAGCGCATGT TCAAGCGCAT GATGCCCAAG GGCCCCACCC GGCAGCGTCT GGGCAAGCTG
TCCTTTGGCG GCATGGGCGG CAGCATCATG CGCGGCATCA TGCGCAAGAA GAACATCATG
CAGGCCGAGG AGCTTTTGGC CGAGGCCATC GAGCTCGGCG TGCGCTTCAC CGCGTGTTCG
ACCAGTATGA CGGTCATGGG CATCACCCGC CGCGACCTCA TGGATCTGCC CAACCTCGAG
TACGCGGGCG TGGGCTCGTT CGTGGGCGAG GCCAAGGGCG CCGGCGTCAG CCTGGTGTTC
TGA
 
Protein sequence
MNASTSSHVT HLDLRGLKCP APVVSASKAV KKLEGRTAVL HILADDDGFA ADLEVWCRAT 
RAELLTIERS EEGIFDATIR VNGHPDDKIT ARLPTPTARS SRPALATPAG GTSTDDATPA
VERTSFDFRG KRCPEPIILL AKEVRQLGES AEFEVLADDD SFPMDIRSWC RSANATLLVL
DEHSGSYRAL IRAKPRPGTE GSESTVTTAA PPVAESARRA APARRPLPVS SAVKVPNMDA
TETATMPISA IAAAAQSETL AAPPAPARAA PTASAEPRIR VDLSSMPAAV VSAYLSSLNH
MQVEHAEAEV EVEILARYGS FAQDVAVWCS KYDHTLTRMN TESDPMSARV SLRAPVDRPG
QASGDAIGEA RAAPATSSER PTEALVPLSD EMRELALARQ QCTLLVLHND LEAVLAALMT
ANAAASNGMQ VVLFFAFWGV NVLRADKPRK DVPAEKVSLM QRMFKRMMPK GPTRQRLGKL
SFGGMGGSIM RGIMRKKNIM QAEELLAEAI ELGVRFTACS TSMTVMGITR RDLMDLPNLE
YAGVGSFVGE AKGAGVSLVF