| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1272 |
|---|
| Symbol | |
|---|
| ID | 8543654 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 1675460 |
|---|
| End bp | 1679032 |
|---|
| Gene Length | 3573 bp |
|---|
| Protein Length | 1190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 646385990 |
|---|
| Product | serine/threonine protein kinase with WD40 repeats |
|---|
| Protein accession | YP_003265725 |
|---|
| Protein GI | 262194516 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase
[COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000159501 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCCG ACGCTGAGCG CTCGGCCGCG CTCTCCGAGC CGGGTAGCCA CGACACCGTC
AATCTCGCGG TCGGGGATCA GGCGCAGCCC CCGGCGTCCG AGTCCGGCGA GGCGATGCAG
ACCGCGTGCG ACGCGGCGAT CGCCGAGACC CTGGTCGTCT CCCCGGTGGC GGATGCGCCT
GTGCCGGGCC GGGACGCGCA ACCGGCCAGT TCGCAGGCGC GCGCGCCCGG CGACGCGTGC
GACACCAGGG ACGAGCGTTC GGTGGCCGCG CGTTCGCGTC CCGAGGTGCA GACGGCCAAG
GGCGAGCGCA TCGGTCAATA CGAGTTCATC CGCTCGCTCG GCCACGGCGG CATGGGCGAG
GTCTTTCTCG CCCGCGATCT GCGCCTGGGC CGCCTGGTCG CGATCAAACG CCTGCACACG
CCCGGCCCCG CTCTGGCCGC GCGCTTCTTG CGCGAGGCCC GCACCACGGC CCGGTGCACG
CACGAGAACA TCGTCGTCAT CCACGAGGTC GGCGAGGTCG GCGGCGCTGG CGGCGAGCCG
TACATGGTGC TCGAGTATCT CGAGGGCCAG ACCCTGCGCG CGTGGCTGCG CGCCCGCGAG
ACCGGCGCGG GCCAACGCGA GCCGGTCTCG CCGACCCGCG CCGTGGAGCT GATGCTGCCG
GTGGTGCGCG CGCTGGCCTA CGCGCACCAG CGCGGCATCG TGCATCGCGA CCTCAAGCCG
GAGAACGTCA TGCTCACGCG CGCCGGGGGG GTCAAGGTGC TCGACTTCGG CATCGCCAAG
CGGGTGCCGA TCGCGGCCAC GTCCACGACC GAGCAGCCCA CCGGCGACAG CTTCGTGAGC
GGCGTCGTCG ATATCTCCTC GGGCTTGGTC ATCGGCCCGG CGAATTACCT CAGCAGCGGG
ATCGTGGGCA CGCTGCCGTA CATGTCGCCC GAGCAGATGA ACGCCGGCGA GATCGACCAT
CGCAGCGACA TCTGGGCGGT GGGCATCATG CTGTTCGAGC TGGTGGCTGG CCGCCATCCC
GTACACCCGG TCACCCACAC GGCGCTTCTG CGCGTGGCCG ACGAGCACGC GCGGGTGCCG
AGCGTGCTCG AGGTGGTGCC CGGGCGCGCG GCCGAGCTGG GCGCGCTCGC CGGTATCATC
GACCGCTGTC TGCTCAAGCT CCCGTCGCAC CGCACGCCGC ACGCGCGCGC CCTGCTGGCC
GAGCTCGAGG CGCTGGTGCC CGAGCGCCAC AGCGCGCGCG TCGGCGACGA CGGCAACCCC
TTCGCCGGTC TGGCCGCGTT TCAAGAGCAC GACGCCGACC GGTTTTTCGG ACGCGAGCGC
GATATCGACC AGGTGGTCGG CGAGCTGCGC AGCCGGCCGC TGGTGGCCCT GGTCGGCCCC
TCGGGGGCGG GCAAGTCGTC GCTGGTGCGC GCCGGCGTCA TCCCAGCGCT CAAGCGCTCG
GGCGAGGGCT GGAGCGCGTA CGTGGTGCGG CCTGGTCGCG AACCGCTCAC GGCGCTGGCC
GCGATGCTGC AGACGACCAT CGAGGACGAC CACGGCGCCG GCCAGGCGTC CGCCGGTCCG
GACGAGCTGC TCATGGACAG CGCCTCGAAC GCGGTGCTCG GCCCGCTGGT CGAGCGGATC
CGCGCTGAGC CCGGCTACCT GGGGGCCCGT TTGCGCATGC GCGCCGGCAG CAAGCTGCGG
CGGCTGGTGA TCTTCGTCGA TCAGCTCGAG GAGCTCTACA CCCTGGGCGC GCCCGCGGCG
GAGCGCACCG CGTTTTTGGC CAGCCTGGCG GCCGCGGCCG ACGACGCGAC CTCGCCGCTG
CGCGTGCTGG TGTCCATGCG CTCGGACTTT CTCGACCGAC TGACCGAAGA CCGCCGCCTG
GGTCGCGAGG TCACGCGCGG CCTGCTGCTG CTGCCGCCGA TGGCGCGCGA GGGTATGCGC
CGGGCGCTGC TGGGGCCGCT CGAGGCCGCC GACTACCGCT TCGAGTCGCC CGCGCTGCTT
GAGCGCATGA TCGACTCCCT GGCCCAGACC CCGGGCGCGC TGCCGCTCTT GCAGTTCACG
GCCGCGCGGC TGTGGGAGCT GCGCGACAGC GACCGGCGCA TGCTCACGGA GGCCAGCTAC
GAGCGCATCG GTGGCGTCGC CGGCGCTCTG GCCACACATG CCGACGCGGT GCTCGGCGGC
CTGTCGTACG TGCGCCAGGC CGTGGCCCGG GCGGTGTTCG AGCGCCTGGT CACGCCCGAG
CGCACCCGCG CGCTGGTGAG CATCGCCGAG CTGCAGACCT GCGGCGGCGA TGTCGACACC
GTGGACGAAA TCGTCCAGCA CCTGGCCGCG ATGCGCCTGC TGGTCATCGA GCGCGGCCAG
CAGGCCGACG CGAGCGCGGT CGAGCTGGCG CACGAGTCGC TGATCGACCG CTGGCCCACG
CTGGCGAGCT GGCTCGACGA GAATGAGGAA GACACGGCGC TGTTGGCGCG GCTGCGCGGC
GCGGCCCGAG ACTGGGAGCG CAGCGGCGGC GCGAGCGGCC TGCTGTGGAG CGGCGCGGTC
GCGCTCGAGG CCTGGGCCTG GCAGCAGCGC TATTCGGGCC CGCTGGCGCC CGCCGAGCGG
CGCTTCCTGG CCGCCGTGTA CGCGGGCGCC ATGCGCACGC GGCGCACGCG GCGCTATCTG
GCGGCGGCGC TGGTGTGCAT CAGCGCGCTG CTCGCCGTGG CCATGGGCTG GCTGGCCTGG
AATCAGACGG TCGCGCGCCG CGAGACCGCT GCGCTCGCCC GCCAGGCCGC CGAGGAGGCC
GCGCGCGCGC GCGACGCCAC GCGCATGTCG GCCCTGCGCA CGATCCCCGA GGACCCGACC
ACGCAGCTCG CCCTGCTGCG CGAGATCGAA GACGCCGCCT CGCCGCCGCC GGGCACGCTG
CAGGAAGCCA CGCGTCTCTT GCACAGCAAC GTCGCGCCCG TGGTCTTCAC CGAGCACGAG
GACGCGGTCT GGTCGGCGAG CTTCAGCCCC GACGGCGCCC GCGTGGCCTC GGCTTCGTAC
GATCGGACGA TTTTGCTGTG GAGCGCCGAC GGCGTCGGCG CGCCCACCGT GCTGCGCGGC
CACGAAGACG CGGTGCTTTC AGTCAATTTC AGCCCCGATG GAACCCGCCT CGCGTCGGCC
TCCAAGGACG GCAGCGTGCG GGTGTGGAAC ACCGACGGCG CGGGCGCGTC GCGCATCGCG
GGCAAGCACG AGGCCGGCAC GAACTCGGCG AGCTTCAGTC CCGACGGCAG CCGCGTGGTC
TCCGCTGCGC AAGACGCCAC GGTGCGGGTG TGGAACGCCG ACGGCAGCGG TGAGCCCGTC
GTCCTGAGGA ACCACGGGGA CTGGGACACG CAAGCGCGTT TCAGCCCGGA CGGGCGGCGC
CTGGTGACGG CCGCCGATGA TGGCACGGTG CGCGTGTGGG ACGAGCTCAC GCCGGTGGCG
GCCGACGACC CGCGGCTGTG GCTGCTCACT ACCTACTGCA TGCCGGTCGC GCGCCGCGTG
GAGCTGCTCG GCGTGGACGA GACCAGCGCC CGCGAGCACC GCGCCCGTTG CCTCGAGCGC
GTGAAGCGCG CCCGCCGGGG CCGAGCGCTG TAG
|
|---|
| Protein sequence | MSSDAERSAA LSEPGSHDTV NLAVGDQAQP PASESGEAMQ TACDAAIAET LVVSPVADAP
VPGRDAQPAS SQARAPGDAC DTRDERSVAA RSRPEVQTAK GERIGQYEFI RSLGHGGMGE
VFLARDLRLG RLVAIKRLHT PGPALAARFL REARTTARCT HENIVVIHEV GEVGGAGGEP
YMVLEYLEGQ TLRAWLRARE TGAGQREPVS PTRAVELMLP VVRALAYAHQ RGIVHRDLKP
ENVMLTRAGG VKVLDFGIAK RVPIAATSTT EQPTGDSFVS GVVDISSGLV IGPANYLSSG
IVGTLPYMSP EQMNAGEIDH RSDIWAVGIM LFELVAGRHP VHPVTHTALL RVADEHARVP
SVLEVVPGRA AELGALAGII DRCLLKLPSH RTPHARALLA ELEALVPERH SARVGDDGNP
FAGLAAFQEH DADRFFGRER DIDQVVGELR SRPLVALVGP SGAGKSSLVR AGVIPALKRS
GEGWSAYVVR PGREPLTALA AMLQTTIEDD HGAGQASAGP DELLMDSASN AVLGPLVERI
RAEPGYLGAR LRMRAGSKLR RLVIFVDQLE ELYTLGAPAA ERTAFLASLA AAADDATSPL
RVLVSMRSDF LDRLTEDRRL GREVTRGLLL LPPMAREGMR RALLGPLEAA DYRFESPALL
ERMIDSLAQT PGALPLLQFT AARLWELRDS DRRMLTEASY ERIGGVAGAL ATHADAVLGG
LSYVRQAVAR AVFERLVTPE RTRALVSIAE LQTCGGDVDT VDEIVQHLAA MRLLVIERGQ
QADASAVELA HESLIDRWPT LASWLDENEE DTALLARLRG AARDWERSGG ASGLLWSGAV
ALEAWAWQQR YSGPLAPAER RFLAAVYAGA MRTRRTRRYL AAALVCISAL LAVAMGWLAW
NQTVARRETA ALARQAAEEA ARARDATRMS ALRTIPEDPT TQLALLREIE DAASPPPGTL
QEATRLLHSN VAPVVFTEHE DAVWSASFSP DGARVASASY DRTILLWSAD GVGAPTVLRG
HEDAVLSVNF SPDGTRLASA SKDGSVRVWN TDGAGASRIA GKHEAGTNSA SFSPDGSRVV
SAAQDATVRV WNADGSGEPV VLRNHGDWDT QARFSPDGRR LVTAADDGTV RVWDELTPVA
ADDPRLWLLT TYCMPVARRV ELLGVDETSA REHRARCLER VKRARRGRAL
|
|---|
| |