Gene Hoch_1262 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_1262 
Symbol 
ID8543644 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp1658947 
End bp1663236 
Gene Length4290 bp 
Protein Length1429 aa 
Translation table11 
GC content72% 
IMG OID646385980 
ProductTetratricopeptide TPR_4 
Protein accessionYP_003265715 
Protein GI262194506 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[N] Cell motility 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.803703 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0826044 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGACT CTCAATTCGG GGCTTCCCCC CCGTCATCCG TCGTCGACCT GAGCGCCCAG 
GCCGATGACG CGCTGCTGGT CGTTTGGGGG CGACAGCCGG GCCGCCGTCC GCGCGCGGTG
ACAGCCGCCG TGTGCGCGCG GATCGACGCC TTGGCCGAGG CCGTGACGGA GGCGGAGACC
ACCCGCGACC CCGAGGCCGT GGAGCGGACG CGCGGGGCGC TGGGTCGCGC GCTGTACGAG
GTGCTCGACG GCCCCGAGCG CGCGCTGGCG CAGCGCTGCC AGGACATCGC GGCTCGCGGC
GCTCGCCGTC TGGCTCTGGT GATTCGCCTG CGCAGCGCTG CGGTCCACGA GCGCGCGGCG
CTGGCCCGGC ATCCGTGCGT CCGCTGGCGC TGGGAGCTGC TCGCCGACGC GCACGGTCCC
CTCGCCACCC GGCGCGGGGG CGTGGCGATC AGCGTACAGC TCGGCGACCA GAGCGTCGCG
GCGCCGGTCG CGCTGCCGCA CGGAGGGCTG CGGATTCTGT TCATGGCGTC GTCGCCGCGC
GGTGTGCAGC CGGTGCTCGA CTACGAGCGC GAGGAGGAGC ACGTGCTCCG CGCGGTCGCC
CCGTTCGTAA AGGACGGCCG CGCCCGGCTG CGCGTCGTCG AACAGGGCAG CCTCGAGTCG
CTCGAGCGCT GTTTGCTCGG GCGCGCGTAC GATATCGTCC ACCTCAGCGG CCACGGCGAG
CTCACCCCAG CGGGGCCGCG CCTGCTCATG GAAGACAACG TCGGCGGCCG CTGCGACGTG
GGGCCGCAGC AGCTCCTCGA GGTGCTGCGC CGCGCCCACG ACCTGCCCGC CCTGGTCATG
ATCTCGGCGT GCTATTCGGG CGGCAGCCGC AACGGCATCC CCAGCCTGGC CGCGCAGCTC
GTGGCCGGCG GCATCCCGAC CGTGGTCGGC TGGGTCCAGC CCGTGCGCGA CGATCTCGCG
ACCGAGGCCG CCGGCGATAT CTACCAGCGT CTGTGCACCG GCAAGACCGT GGCGCAAGCG
GTGTCCTTTG CCCGCCAGCG GCTCCACGAT ACCGATCAAA AGGGCCTCCC CTCGGTCCCG
CCGACGCATA CCTGGGGCAC GCTCCAGCTC CTCACCGACG CGGCGTCCGA TATCCACCTC
GACGCCCAGC GGCCGCCGCT GAGCGACGAG CCCGCCGGCA GCGACGAGGC GTACACCTAC
CTGAGCGAGG GCCGCGTGCG CGTGCTCGAG CGCGGCTTCG TCGGTCGCCG CCGCGAACTG
CAGCGTCTGC TCTTCATCCT CATGCACGGC AAGGATGGCG AGGGCGAGCG CTGCGCGGGC
GCGATCATCC TGGGCATGAA GGGCGTGGGC AAGTCGTGCC TGGCCGCGCG CGCTGTGCAG
CGCCTGGCCC AGGGGCTGGC GGATCCGAGC GAACTCGGAC AGGTGGTCCT GCACGGCGCG
CTGGACGAAT TCACCGTGCT CGAGCAGTTC GAGATGCAGG CCATCCGCTG GGGGGACCGC
GACGCCGAGG ACATCCTGAG CGACGCGCGC GAGCCGCTGC CGCGTCGCCT GCGGCGGCTG
CTCGCCGGGC GCTGGCGCAC GCGGCGGCTG GTCATCGTGC TCGACAACTT CGAGCACAAC
CTCACGCCGC GCGCCGAGGG CGACGCGCTG CTCCACCCCG AGGTCGCCGC GCTGCTCGAC
GCGCTGGTGC CCGCGTGCCG TACCGGCCAC GCCAAGCTGC TGGTGACCAC CACGGCCAGC
TTCGAACTCC CCGCCTCGGC GCGCCGCTCT CTGCCCGTGA TCCGGCTGGG GCCGTTCGAG
CCCTCGTCGC TGCGCAAGCT GTGGAATCGC AGCCGGCACG ACGAACCCGG CGCAGACCAA
GCTCGCAGCG CCGGCGCCTC ATCGACCGGG TCCGCGGCGC AGCTCGACGA ACCGCAGTGG
ATGGCGATGT GCGACCGCCT GGGTCGCAAC CCGCGCGTCA TCGACTGGGC GCGCTCGCTG
CTCTCCGGCA CCGTACCGGC CACGGTCGAA ATCCTGGCCT CGAGCGCCGG GCTGACGCTG
TCGTGGCAGG CCGGCGACCT GCCGTCCGCG GACGCCGAGA CGCAGCTCCG GGGCATCTAC
CTGCATCACC TCTCCTACCA GCACGTGCTC ACGCTGGTGA GCGTCGATGC GCGTCGCCTC
GTCAAGCGCG CGCGCGTCTT CGAGGTAGCC GTGCCCAAGC GCGCCTTCGC GGGTCTGTGC
GCGGGCGTCG ACGTCGACCT CGACGCCCAT CTGCCCGCGC TGCAAAACCT CGGTCTGCTC
GAGGCGGGCG AGCTGGACGG CGTCCCCGCC TATCGCGTGA GCCCGCTCGT CGAGCCGTTC
CTCGACGTGC CCGGCCCGAG CCGATGGCAC GAGGTCGCGG CCGAGTTCTG GGAGGAGGAA
GGCCGCCGCG ACGACACCTC CGAGTGCATG CAGTGGGCCT GGGAGCACTC GCTGGCCGCG
GGTCGCCAGG TGAGGGCGGA TCGCACGGGC TGGCGCTTGC ACCAACGCCT CCTCCGCGCC
GGCAGCCACC ACAAGAGCCA ATCGCTGGCC GAGCGGCACC TGGCCGTGTT CCCGTTCTCC
GCCGTCGGCC ACGCGTGGCT GGGAATCGCC GTCGAGCGCA GCGGCGAGCC GCTCCACGGC
TGGAGCCATT ATCGCCGCGC CGAGTCCCTG GCGGAAACCG TCGGTTGCCA GGGCGTATCC
CGCGCGGAGC TCTTGCGCAC GGGCGGCGAA ATCCTCCGCG GACTCGGCCG CTACGTCGAG
GCGCGGGCAC GGCTGGAGCA GGCGGTCGAA CTCGACGAGC ACAGCGAGAC GCCCGATAGC
GCAAGCCTCG CGTCCTCGCT GCTGGGGCTG GCGCGGGTGC TGCATGCTCA GGGCGAATTC
GAGAGCGCGC GCGTGCAGCT CGAGCGCTCG CTGGTGCTGC ATACCAACAC CCACGGCACG
GTCGATCATC CGCACGTGAC CGACACCCTG TACGAACTCG CGCAAATCCT GCGCAGCCAG
GGCGATCTCG ACGGCGCGCG CGATCGTCTG GAGCGAGCGC TGCGCAAGTA TATCGCCCGC
TACGGCACCG ACGAACACGT CCGCGTGGTC GGCGTGCTGC ACGCGCTGGC GGGCGTCCGG
CTGCGCCAGG GCGACCTCGA CGGCTCGCAC TCGCTGCTCG AGCGCTCGCT CGCGCTCACC
CGATCGCTGC ACGGCTCCGA CGTCCATCCC CTGATCGCGC GAGCGCTGCA CGAGCTGGGC
CGCGTGCGCT TCGCCCAGGG CCGGCTGGTA AGAGGGCGCG AGTGCCTGGA GCGCGCGCTC
GACTTGAATC TCGAGCTGTA CCGCACCTAC GAGCACCCGG ATGTGGCCAG CGTCTTGTAC
GAACTCGGCC GATGCCTGCA CGTCCAGGGC GAACTCGACA GCGCCCGCGA GCACCTCGAG
CGCTCGCTGC GCATCAGCCA GTCCCTGTAT CGCGGCAAGC AGCATCCACA CGTGGCGGGG
GCGCTGCACG GGCTGGGACT GGTGCTCTGT GCCCTGGGCG AACTGCACGG CGCGCGCGCG
CACCTGGAGC GCGCGCTCGA GATCGGGACC GCCTTGCACG GCACCGATCT CCACTTTCGC
ATAGCGGAGA CCCTGCACGA GCTGGCGCGC GTGCTGGGCG CACAGGGTGA CGCCGCGGGC
GCCCGCGAAC GCTTCGAACG GGTGCTGGCC ATCTGCGCCG CGATCTACGA AACCGATCAC
CACCCGCAGG TGGCCAGCTC TCTCTACGAG CTCGGCCGCG TGCTGTGCAT GCAGGGAGAG
TTCGTCGGCG CCAGCCAGCG CCTCGAACGC TCGCTGGCGA TCAGCACTGC GCTCTACGGC
ACCGAGGCGC ACATGCACGT CGCCGGTGCG CTGCACGAGC TCGGGCGCGT GCGGCACTTC
CAGGGCGATC TACGCGCTGC GCTCGACCAC CTGGGGCGCG CGCAGGCGCT CAACACCGCC
GTGTACGGCA CCGAGCAGCA CCTGCACATC GCGGAGAATC TGTACGAGCA AGGCAGGGTG
TACGAAACAC AGGACCAACG ACGCAGCGCT CGCGAGCGCT ACGCACAGGC GCTGCGGATC
GTCAAATCGT GCCTCGGCAC GCGCGAACAC CGTCTGGCCG CCGAGATCGA GCTGGGCCTC
GGCCTGTGCT TGCTCCAGGA TGGCAGCAGA GACGAGGCCC AGCCGCTGCT TTCGCACGCC
GCGACGCTCC TGGCGGCTCA GTCGCCGCAG CACCCGAGGC TCGAAGAGCT GCGCCAGCGC
TTCCCGGAAG CGCTGAACCG CGCCTCGTAA
 
Protein sequence
MIDSQFGASP PSSVVDLSAQ ADDALLVVWG RQPGRRPRAV TAAVCARIDA LAEAVTEAET 
TRDPEAVERT RGALGRALYE VLDGPERALA QRCQDIAARG ARRLALVIRL RSAAVHERAA
LARHPCVRWR WELLADAHGP LATRRGGVAI SVQLGDQSVA APVALPHGGL RILFMASSPR
GVQPVLDYER EEEHVLRAVA PFVKDGRARL RVVEQGSLES LERCLLGRAY DIVHLSGHGE
LTPAGPRLLM EDNVGGRCDV GPQQLLEVLR RAHDLPALVM ISACYSGGSR NGIPSLAAQL
VAGGIPTVVG WVQPVRDDLA TEAAGDIYQR LCTGKTVAQA VSFARQRLHD TDQKGLPSVP
PTHTWGTLQL LTDAASDIHL DAQRPPLSDE PAGSDEAYTY LSEGRVRVLE RGFVGRRREL
QRLLFILMHG KDGEGERCAG AIILGMKGVG KSCLAARAVQ RLAQGLADPS ELGQVVLHGA
LDEFTVLEQF EMQAIRWGDR DAEDILSDAR EPLPRRLRRL LAGRWRTRRL VIVLDNFEHN
LTPRAEGDAL LHPEVAALLD ALVPACRTGH AKLLVTTTAS FELPASARRS LPVIRLGPFE
PSSLRKLWNR SRHDEPGADQ ARSAGASSTG SAAQLDEPQW MAMCDRLGRN PRVIDWARSL
LSGTVPATVE ILASSAGLTL SWQAGDLPSA DAETQLRGIY LHHLSYQHVL TLVSVDARRL
VKRARVFEVA VPKRAFAGLC AGVDVDLDAH LPALQNLGLL EAGELDGVPA YRVSPLVEPF
LDVPGPSRWH EVAAEFWEEE GRRDDTSECM QWAWEHSLAA GRQVRADRTG WRLHQRLLRA
GSHHKSQSLA ERHLAVFPFS AVGHAWLGIA VERSGEPLHG WSHYRRAESL AETVGCQGVS
RAELLRTGGE ILRGLGRYVE ARARLEQAVE LDEHSETPDS ASLASSLLGL ARVLHAQGEF
ESARVQLERS LVLHTNTHGT VDHPHVTDTL YELAQILRSQ GDLDGARDRL ERALRKYIAR
YGTDEHVRVV GVLHALAGVR LRQGDLDGSH SLLERSLALT RSLHGSDVHP LIARALHELG
RVRFAQGRLV RGRECLERAL DLNLELYRTY EHPDVASVLY ELGRCLHVQG ELDSAREHLE
RSLRISQSLY RGKQHPHVAG ALHGLGLVLC ALGELHGARA HLERALEIGT ALHGTDLHFR
IAETLHELAR VLGAQGDAAG ARERFERVLA ICAAIYETDH HPQVASSLYE LGRVLCMQGE
FVGASQRLER SLAISTALYG TEAHMHVAGA LHELGRVRHF QGDLRAALDH LGRAQALNTA
VYGTEQHLHI AENLYEQGRV YETQDQRRSA RERYAQALRI VKSCLGTREH RLAAEIELGL
GLCLLQDGSR DEAQPLLSHA ATLLAAQSPQ HPRLEELRQR FPEALNRAS