Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_0351 |
Symbol | |
ID | 8542731 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 488576 |
End bp | 490225 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 646385148 |
Product | membrane-associated zinc metalloprotease |
Protein accession | YP_003264885 |
Protein GI | 262193676 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGATCG TCTACTTCCT TCTTTTAGTG GGCGTGCTCG TGGTCATCCA CGAGCTTGGC CACTTCATCG CCGCCAAGCT GCTCGACTTC AAAGTCCTGC GTTTCTCGCT CGGTTTTGGT CGTCCGCTGC TGCGCACACG CCTGGGCGAG ACCGAGTATC AGCTCGGCAT CATGCCGCTG GGCGGCTATG TGCGCATCCT CGGCGAGGAC GGCGGCGACG ACGTGCCCTC GAGCGACGCG GTGCGCTCGT TCCGCGGCAA ACCGCTGTGG CAGCGCCTGA TCGTGGTGTT TGCCGGACCC ATGGCCAACC TGGTGTTCCC GGTGATCATC TACTTCACGC TGTTCGCCGG GCACAGCCAG CTCCCGGCGG CCGTGGTCGG CGACGTGCTC GCCGATGCCC CGGCCGCGCG CGCGGGTCTG GCCCCGGGCG ATCGCGTCGA GACCATCAAC GGCGAGCCCG TCCGCTACTG GGAAGAGCTC GAGAACGCGG TCAAAGACAG CATCGGCCAG GAGCTGCGCC TGGGCCTGCG CCGCGGCGAC AAGAGCTTCG AGAAGTACAT CGCGCCGGTC GAACAAATCG TCCGCACGCG CGACGGCGGC GCCACCCGCC AGGGCTTCAT CGGCGTCACC CACGCGCCCT TCCTGCCCCT GGTCGGCGTG GTCGACCCGG GCTCGCCCGC CGCTCAGGCC GGCCTGCGCA CCGGCGACCT GCTGATCAGC ATCGACGGCG AGTCGGTCGC CAACTGGACC GAGGTAAAAG CCAAGCTGGC GCGCAACACC CGCCGCACCA GCCTGGTGTA CCTGCGCGGG CGCGCGGCCC CGGGCGTGAG CTCGGTGCAT CTGCTCGAGG CCCAGTTTGC CGACCTGGTG CCCGAAATCC GCCGCAGCGT GAGCGGCCGC CAGCGCGTGT ACACCGGCCT CGAGCCGGCC GAGATGTTCG TCGCCCAGGT CGATCCCGGC TCGCCCGCGG CCGCCGCCGG CCTGCGCCCG GGCGACCTCA TCACCGCGCT CGACGGCGAG CCCATCGATC ACTGGATGGT GCTCGACCAG CGCCTGCAAG CCCGGCCCGA GCACACCTGG ACGCTCACCT GGCAGCGCGC CGACGGCGAC CAGGTGGTCA TGCGCAGCGG CGAGCTGCGC CAGCGCTGGA TCGAGGAGCG CGACGAGTAC GGCCACACCC AGACCCGCCT GGCCTTTGGC GCGCACAGCG ACTTCGAGCG CGGCCGCGGC GAGCTGGTGC CGATCAAGGG CCGGGTGCAG TACGCGTTCG AAAAAGCCAT GGGACGCAGC GCCGAGACCG TCGGCGCCAT GGTCTCGGGC TTCACCGAGA TCCTGCGCGG TCAGGTACCC GGCGACAGCG TCGGCGGCCC GCTGATGATG TACCGCGTGG CCTCGGTCTC GGGGCACAAG GGCTGGGACA GCTTTCTGCT CATGCTGGCG CTCATCAGCG TCAACCTCGG CCTCATCAAC CTGCTGCCCG TGCCCGTGCT CGACGGCGGA CACCTGGTCG TCTTCGCCGC CGAGGCCGTG CGCAAGCGGC CGCTGTCGCT CGCCGCCCGC GCGCGCGTGC AGTACGTGGG CCTGGCCGTG GTCGGCGTCA TCACCGTGCT GGCGCTGCGC AACGACGTGG TCCGCTACCT GCTGCAGTAG
|
Protein sequence | MSIVYFLLLV GVLVVIHELG HFIAAKLLDF KVLRFSLGFG RPLLRTRLGE TEYQLGIMPL GGYVRILGED GGDDVPSSDA VRSFRGKPLW QRLIVVFAGP MANLVFPVII YFTLFAGHSQ LPAAVVGDVL ADAPAARAGL APGDRVETIN GEPVRYWEEL ENAVKDSIGQ ELRLGLRRGD KSFEKYIAPV EQIVRTRDGG ATRQGFIGVT HAPFLPLVGV VDPGSPAAQA GLRTGDLLIS IDGESVANWT EVKAKLARNT RRTSLVYLRG RAAPGVSSVH LLEAQFADLV PEIRRSVSGR QRVYTGLEPA EMFVAQVDPG SPAAAAGLRP GDLITALDGE PIDHWMVLDQ RLQARPEHTW TLTWQRADGD QVVMRSGELR QRWIEERDEY GHTQTRLAFG AHSDFERGRG ELVPIKGRVQ YAFEKAMGRS AETVGAMVSG FTEILRGQVP GDSVGGPLMM YRVASVSGHK GWDSFLLMLA LISVNLGLIN LLPVPVLDGG HLVVFAAEAV RKRPLSLAAR ARVQYVGLAV VGVITVLALR NDVVRYLLQ
|
| |