| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_0319 |
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| Symbol | |
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| ID | 8542699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 454706 |
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| End bp | 456904 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 646385116 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_003264853 |
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| Protein GI | 262193644 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCAATC TGCGCAACCT GCGCCGCGCC CTGCACATCG GCGGCGGCAC CCTGGTCGGC
GCGCTGGCGT GCGCCATGAT CGCGGCCGGC GCGCTCGACG CCTCGGCGCT CGAGACCCCG
CGCATCGCCT CGATGCTGCT GCTGGCCTGC GTCGCCGTGC TCACGGTCAC CGCGATCTCG
CGGCGCATGC AGTTCACGCC GCCGAGCGCG CGCTCGCAGC GGGCCTCGTT CTGGCTTGGC
GCGGCCCCGA TCCTGGCCGA CGTCGAGATC GCGTTCGCGC TGGTCTCGGC CTGCTACGCG
ATCATCGCGG TCACCGGCTC CATGGACTCG CCCATGTATC CGCTGCTCTA CGGCGTGGTC
GCGTTCGCCG TGAGCTTCCT GTCGCGACCC GGCGCGTGGG CGACCGTGGG CGCCGCCGTC
ATCCTCGAGT TGGCGTTCTT TCTGCGCATG CCCTTCGGCA TGGACGCGGT CGCGCCCCTG
CTCTTGCACG GCTTCTTCCT GGCCGGCGCG AGCGCGGCGC ACGCCCTGTT CTGGCGCGGT
CTCATCGCCG CGCATCAGCG CCGCCGCGCC CGCCGCCTCG AGCGTGAATT GCAGGCGCAG
CGCGACTCGG CCCGCGACTA CCGATTGATC GCGGCCGCGC TCGGCGCCGA GAGCCGGGCG
CCGCGCAATC GCCTGCAAGA GGAGCACATG CTGGCCCTGG GCGGCGTGCA GACCATCAGC
GACTCGGTGT TCCACACCAT GCGGCTGATG AAGTGGGCCC TGGGCGCGCA GACCTGCGCC
CTGCTATGGC TCACCGAGCG CGGCGACGCC TTCAAGGTCA AGGAGCTGGC CAGCGACTCC
GACGACGTCA CCGAGTCCTC GCGCGTGGCC GCGGCCGGTC CCCTGGGCGC CATCCTGCGC
GACCGCGCGC CCCTGATCCT GGCCCGCACC AAGCCGCGCC AGATCCCCTA CTACGATCGC
GGCGACTTCA CCGGCGCCTT CGTCGGCGTG CCGGTCATGG AGGGCGCGCA CCTGCGCGGC
ATCCTGTGCG CCGACCGCGA CCAGCCCTTC GATGACGACG AGCTGACCAT CCTGGCCGGC
GCCACCGAGC AGATCCTGCG CTACGTGCAG TCCGAGCAGG TGTTCCGCGC AGTCGAGCGC
GCCAAGTACG AACACGAGCG CTTCTATCAC GCCTCGGCCA TGCTGTGCCG CGCGCTCACG
CTCGAGGAGG TCATGGAGAC CGCCTTCGAC GCCGCGTCCC AGATCGTCGG CTTCGACCTG
GCCGCGATCA CCATCTACGA GCCCGAGCGC AAACGCCATC GGGTCTATAG CGTACGTGTG
TCCGACGAAG ACGCGCCGCT CATCGACCCC GAGAGCTTGG CCGACCTCGA GTTCCGCGAC
AACACCGGCC TGGCCGCGAT GGTGGTCAAG AACAAGCACT ACCTGCCCGC CGGCGGTGAG
CTGCGCGACC TCACCGCGCC CGTGTACACC AAGCAGGTGC GCCTCAAAGA GGCCGAGTCG
CTGCTGGTGC TGCCGCTGCT CAGCGGCGAC GAGGCCATCG GCACCTTCAT GCTGGCCTCG
CGCGAGCGCC AGCAGTTCGG CAAGGACGTG CGCGAGATGC TCGGCATCAT CGCCAACCAG
GTCGCCGTGT CGCTGCAGAA CGGCATGATG TACAAGACCA TGGAGACCAT GGCCACCACC
GATGGCCTCA CCGGTCTCAC CAACCACCGC ACCTTCCAGG ATCGCCTGGT GCAGCTCCTC
GACCGCGCCG AGCGCACCCG CCAGCCGGCC GCCATCCTGC TGTGCGACGT CGACCACTTC
AAGAACGTCA ACGACACCTA CGGCCACCCC ATCGGCGACG AGGTGTTGCG CCAGGTCGCC
GGCGTGCTGC TGCGCTCGGT GCGCAAGATC GACATCCCGG CCCGCTACGG CGGCGAGGAG
TTCGCCGTGG TGCTCGAGGC CACCGACCTC GAGGGCGCCA TGAACCTGGC CGAGCGCATC
CGCAAAGACG TCGCCGCCCT GGTCGTGGAT TCGGACAAGG GTCCGTTTCA GGTCACCATG
TCGATCGGCA TCGCCAGCTT CCCCGACGAC GCCACCGACC GCGCCGTGCT CATCGAGCGC
GCCGACAGCG CCCTGTATCT GGCCAAGGAG AGCGGGCGCA ACCGCTGCAT GAGCTACCAG
ACCCTGGCCG CGTCGCGGCG CCTGCGCAAA GCGTCTTGA
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| Protein sequence | MSNLRNLRRA LHIGGGTLVG ALACAMIAAG ALDASALETP RIASMLLLAC VAVLTVTAIS
RRMQFTPPSA RSQRASFWLG AAPILADVEI AFALVSACYA IIAVTGSMDS PMYPLLYGVV
AFAVSFLSRP GAWATVGAAV ILELAFFLRM PFGMDAVAPL LLHGFFLAGA SAAHALFWRG
LIAAHQRRRA RRLERELQAQ RDSARDYRLI AAALGAESRA PRNRLQEEHM LALGGVQTIS
DSVFHTMRLM KWALGAQTCA LLWLTERGDA FKVKELASDS DDVTESSRVA AAGPLGAILR
DRAPLILART KPRQIPYYDR GDFTGAFVGV PVMEGAHLRG ILCADRDQPF DDDELTILAG
ATEQILRYVQ SEQVFRAVER AKYEHERFYH ASAMLCRALT LEEVMETAFD AASQIVGFDL
AAITIYEPER KRHRVYSVRV SDEDAPLIDP ESLADLEFRD NTGLAAMVVK NKHYLPAGGE
LRDLTAPVYT KQVRLKEAES LLVLPLLSGD EAIGTFMLAS RERQQFGKDV REMLGIIANQ
VAVSLQNGMM YKTMETMATT DGLTGLTNHR TFQDRLVQLL DRAERTRQPA AILLCDVDHF
KNVNDTYGHP IGDEVLRQVA GVLLRSVRKI DIPARYGGEE FAVVLEATDL EGAMNLAERI
RKDVAALVVD SDKGPFQVTM SIGIASFPDD ATDRAVLIER ADSALYLAKE SGRNRCMSYQ
TLAASRRLRK AS
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