Gene Hoch_0136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_0136 
Symbol 
ID8542515 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp206778 
End bp207476 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content62% 
IMG OID646384932 
Productprotein TolQ 
Protein accessionYP_003264670 
Protein GI262193461 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0811] Biopolymer transport proteins 
TIGRFAM ID[TIGR02796] TolQ protein 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGACT TTCTTCATAT TTTGGCCGCT GCGGGTCAAC TCGACCTCGC GTCTCTGATC 
CTTCAAGCTC ACTGGGTCGT CAAAGCCGTG ATGGCGCTCT TGGCGCTGAT GTCGATCATC
GGCTGGTACA TCATCGGATC CAAGCACATC CACATTCGCC GAGCGACCAA GGAGTCGAAC
AAGTTCCTCG AGTCGTTCTG GCGTACGCGC GACATCGAGC AGATCTATAA ACAGGCCAAA
GGGCTGCAGA ACAGCCCGAT CTCGGCCATG TTCCTCGCCG GCTACACCGA GCTGGCCAAG
CTCGAGGCCG ACGAGCGGCC CACGCGCGAT AAAGAGGCCG ACCTCGAGAA CGTCGAGCGC
GCCCTGCGCC GCACCCAGAC CATCGAGACC ACCAAGCTCG AGAATATGAT TCCGTTTCTG
GCCACCACCG GCTCGGCGGC GCCCTTCATC GGCCTGTTCG GCACGGTCTG GGGCATCATG
AACTCGTTCA CCTCGCTGGG CAGCGGCGCG GCCAACATCC AGACCGTGGC GCCCGGCATC
GCCGAGGCCC TGTTCGCCAC CGCCATCGGC CTGGTCGCCG CCATCCCGGC GGTCATGGCC
TACAACTACT TCACCCGGCG CATCCGCATC CAGGTGTCGC ATATGAACAC CTTCGAGCAG
GATTACCTCA ACATCATCCG CCGCCACTTC CTGAGCTGA
 
Protein sequence
MLDFLHILAA AGQLDLASLI LQAHWVVKAV MALLALMSII GWYIIGSKHI HIRRATKESN 
KFLESFWRTR DIEQIYKQAK GLQNSPISAM FLAGYTELAK LEADERPTRD KEADLENVER
ALRRTQTIET TKLENMIPFL ATTGSAAPFI GLFGTVWGIM NSFTSLGSGA ANIQTVAPGI
AEALFATAIG LVAAIPAVMA YNYFTRRIRI QVSHMNTFEQ DYLNIIRRHF LS