| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_0082 |
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| Symbol | |
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| ID | 8542453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 129283 |
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| End bp | 131265 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 646384870 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_003264616 |
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| Protein GI | 262193407 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.81164 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCA TCGGCTCGAC TCCTGGGCGC GCGCGTCTGC CGGCCCGGAG CGGGGTCGCC
GGCGCGGTCG GCAACCGGCG TCAGGCGCGC GCGGCCGCCG TCATCCTCGA CATCTTCATC
ATCGGCTTCA GCACCATGGC CGCGTACGCG ATCCGCTTCG GCTTCGTGGG CATGGTCCAG
GCCAAGTACC TGTACCAGAT GATGATGCTG GTGCCGACGC TGATCGCCGC GCGCCTGCTG
CTCAACGCCG CGCTGGGCGT GTACCGCATG ATGTGGCGCT ACGTCGGCCT GCGCGAGGCG
CTGCGCTTCA TGCGCTCGGC GGCCGTGGGC AGCGCGCTGG TGAGCGTGGT GCTGCTGTTC
CTGCGCTACG CCACCTCGGA GCGCTACGAG TTCTTGCAGG TGCCCATCGG CATCATCATC
CTCGAGGGCA CATTCACCTT CGGCGCCATC ATGGGCAGCC GCTTCTTGCC GCGGATTTTG
GCCGAGCGTA CGAATTCGAC CGGCGACGGC GCGCAGCCGA CGCTGCTGGT GGGCGCCGGC
CGCGGCGGGC TGGCGATCGC GCGCGAGGCC GCGCTCAACC CCGCGCTCGG CTTCGAGGCG
CGCGGCTTCA TCGACGACGA CCCGTCCAAG CACGGCCGCG AAGTGCACGG TTTGCGCGTC
TACGGCGGTC TGGACGCGCT CGAGGACGCG ATCCACGAGC TCGCCGTCAG CGCCGTGATC
GTCACCACCT CGGCCATCGC GCCGGCCCAG CTCCTGCGCA TCGTCGACAC CGCGCGCGCG
CTCGGCATCC AGGTGCGGAC GGTGTCGCGC GCCTTCGAGC TGCTCGACCA TCGCGTCGAC
GCCGACACCC TGCGCGAGGT GCGCATCGAG GATCTGCTCA GCCGCGATCC GGTGCCGCCG
TCGCTGTCGA TGGACGATCT GGTCGGCGCC TACGGCGGCA AGCGCATTCT GGTCACCGGC
GCGGGCGGCT CCATCGGCAG CGAGCTGTGC CGCCAGCTCG CGCGCATGGG GCCGGCCCAG
CTCCTGCTGG TCGAGCGCGA CGAGACCAAC CTCTTCGAGA TCGAGCGCGA GCTGAGCAGC
GATGTCGCCC GATCGGACGA AAACGCTACC AGCAGCGGCG CGGAGCCCGC GGGTGACGCG
CTCTGGGTGC CGATCCTGGC CGACATCTGC GACGCCAAGG CGATGAACGA GGTGTTCGCG
CGCCATCGCC CCGAGGTGGT GTTTCACGCC GCGGCCTACA AGCACGTGCC GATGATGGAG
CGCTTTCCCC ACGAGGCCGT GCGCAACAAC GTGTTCGGCA CCCTGCGCCT GGCCGAGATG
GCCGACCAGC ACGGCGTGGA CAGCTTCGTG ATGATCTCGA CCGACAAGGC CGTGCGCCCG
AGCAGCGTGA TGGGGGCGAG CAAGCGCCTG GCCGAGATGG TGGTGCAGCA GCTCGCCGCG
CGCAGCCGCA CCAGCTTCTC GTGCGTGCGC TTTGGCAACG TGCTCGGCAG CCGCGGCAGC
GTGGTGAGCA TCTTCCGCGC GCAGATCCAG CAGGGCGGCC CGGTCACGGT CACGCACCCG
GACGCCGTGC GCTACTTCAT GACCGTGGGC GAGGCCGCGC ATCTGGTGAT CCAGGCCGGC
ACCCTGGGCA GCCGCGGCGA GGTGTATCTG CTCGACATGG GCGAGCCGGT GAAGATCCTC
GAGCTGGCGC GGCAGATGAT CTCGCTGAGC GGCGCCACCG AGGCGTCGAT CGCGATCGAG
ATCATCGGCA CGCGACCGGG CGAGAAGCTG TTCGAGGAGC TCAAGACCGA CTCGGAGGAG
CTCGAGCAGA CGCCGCTGCG CAAGGTCTAT CGCTGCTCGC TGGGGGCGAT CGACGAGCCC
GCGCTGCGCG CGACCCTCGA GCGCCTCACC TTCCTCGTGC GCGCCAAGGA CGGCGACGGC
GTGCGCGACT GTCTGGCCGC GCTGGACATC GATTACCGGC GCCCGCCGGC GGCCATGGTG
TAG
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| Protein sequence | MSGIGSTPGR ARLPARSGVA GAVGNRRQAR AAAVILDIFI IGFSTMAAYA IRFGFVGMVQ
AKYLYQMMML VPTLIAARLL LNAALGVYRM MWRYVGLREA LRFMRSAAVG SALVSVVLLF
LRYATSERYE FLQVPIGIII LEGTFTFGAI MGSRFLPRIL AERTNSTGDG AQPTLLVGAG
RGGLAIAREA ALNPALGFEA RGFIDDDPSK HGREVHGLRV YGGLDALEDA IHELAVSAVI
VTTSAIAPAQ LLRIVDTARA LGIQVRTVSR AFELLDHRVD ADTLREVRIE DLLSRDPVPP
SLSMDDLVGA YGGKRILVTG AGGSIGSELC RQLARMGPAQ LLLVERDETN LFEIERELSS
DVARSDENAT SSGAEPAGDA LWVPILADIC DAKAMNEVFA RHRPEVVFHA AAYKHVPMME
RFPHEAVRNN VFGTLRLAEM ADQHGVDSFV MISTDKAVRP SSVMGASKRL AEMVVQQLAA
RSRTSFSCVR FGNVLGSRGS VVSIFRAQIQ QGGPVTVTHP DAVRYFMTVG EAAHLVIQAG
TLGSRGEVYL LDMGEPVKIL ELARQMISLS GATEASIAIE IIGTRPGEKL FEELKTDSEE
LEQTPLRKVY RCSLGAIDEP ALRATLERLT FLVRAKDGDG VRDCLAALDI DYRRPPAAMV
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