| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_2410 |
|---|
| Symbol | |
|---|
| ID | 8535574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 2578715 |
|---|
| End bp | 2580061 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 646384784 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_003264266 |
|---|
| Protein GI | 261856983 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.749558 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATTCGC CACACGACAC CATTGCCGCC ATTGCCACAG CGCCCGGACG TGGTGGTGTC
GGCATTATTC GTTTATCCGG CACGCAAGCG CACGCGATTG CCGAACGCAT CGTCTCGACC
TTGCCTCCGA TCCGCTACGC GCGGCACGTC CCATTTAAAC ACCCCAATAC CGGCGCGCTC
ATCGATGACG GGCTTTGCCT TGTATTTTCG GCGCCGCATT CGTACACCGG CGAAGACGTG
GTGGAATTGC AAGGCCATGG CGGCCCGGTC GTACTGGATC ATCTGCTGAA ACTGATTCTT
CAACAGGGCG CGCGACTGGC TCGCCCGGGT GAATTCACCG AACGCGCCTT TCTCAATGGA
CGAATGGATC TGGCGCAGGC CGAAGCGGTA GCCGATTTGA TCGATGCCGG CAGCCAGGCC
GCCGCGCAGG CCGCAAGTCA GGCTCTGCAA GGCGTGTTTT CCGAACGGGT TCATCGCGTC
ACACAACAGC TGATTGCGTT GCGCATGTTC ATCGAATCCG CGCTTGATTT TCCCGAAGAA
GAAATTGATT TTCTTTCCGA TGCCCGGCTG ATTACCCAAT CACAGCAACT GGTCGATGAA
ATCGCCGAAC TGCTGTCTGA AACACAGCAA GGCGTACTCC TTCGCGAGGG CATGCGCGTC
GCGATCGTCG GTCAGCCGAA CGCCGGGAAA TCGAGTCTGC TGAATCAATT AGCCGGAGAT
GATCGTGCCA TTGTGACCGA CATACCGGGC ACCACACGCG ATGTACTACG CGCCGAAATT
CAGATCGATG GCCTGCCCGT CCATATCATC GACACCGCCG GTTTGCGTGA AAGTGACGAG
CCGATTGAAC GTGAAGGCAT TCGCCGCGCC TGGCGTGAAG TGGAACAGGC GGACGCGGTG
TTGTTTCTTC AGGACGACCA CCGCAATAAT CCGGATGAGG ATGAAAAGAT CCGAGCCATG
CTGCCGCGCA AACACACCAT TTGGGTATTC AACAAAATCG ACCTGAGCGG TCGTCCAGCA
GGATTCGATC AGGAAAAAAT CCATCTGGGC ATCAGCGCAA AAACCGGCGC GGGCATTAAG
GAACTTCGCG CACATCTCAA GGAAATCATG GGTTATCAAT CCACGGAAGG CGGTCAGTTC
ATCGCCAGAA GAAGACACCT GGATGCCTTA CTTGGTGCTC AAAAAGAAAT CATTTCTGCC
CATAGTGCTT TGACGACACA ATCCGCTGGA GAACTGGCAG CCGAATCGCT CCGTCGAGCA
CAGCTAGCCT TGGATGAAAT CACCGGAAAA TTCACCGCAG ATGATCTGCT CGGTGAAATT
TTCAGCAATT TCTGCATTGG AAAATAA
|
|---|
| Protein sequence | MHSPHDTIAA IATAPGRGGV GIIRLSGTQA HAIAERIVST LPPIRYARHV PFKHPNTGAL
IDDGLCLVFS APHSYTGEDV VELQGHGGPV VLDHLLKLIL QQGARLARPG EFTERAFLNG
RMDLAQAEAV ADLIDAGSQA AAQAASQALQ GVFSERVHRV TQQLIALRMF IESALDFPEE
EIDFLSDARL ITQSQQLVDE IAELLSETQQ GVLLREGMRV AIVGQPNAGK SSLLNQLAGD
DRAIVTDIPG TTRDVLRAEI QIDGLPVHII DTAGLRESDE PIEREGIRRA WREVEQADAV
LFLQDDHRNN PDEDEKIRAM LPRKHTIWVF NKIDLSGRPA GFDQEKIHLG ISAKTGAGIK
ELRAHLKEIM GYQSTEGGQF IARRRHLDAL LGAQKEIISA HSALTTQSAG ELAAESLRRA
QLALDEITGK FTADDLLGEI FSNFCIGK
|
|---|
| |