| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_2161 |
|---|
| Symbol | |
|---|
| ID | 8535325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | + |
|---|
| Start bp | 2319503 |
|---|
| End bp | 2320462 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 646384542 |
|---|
| Product | porphobilinogen deaminase |
|---|
| Protein accession | YP_003264024 |
|---|
| Protein GI | 261856741 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0181] Porphobilinogen deaminase |
|---|
| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCTA CCGCCCCTTC CGTTGATCTG ATTCGCATCG CCACGCGTGA AAGCCCACTG
GCGATGTGGC AGACCGAGTT TGTGGCGGAC GAATTGCGGC GATTGCACCC GGGACTTCGG
GTAGAGCTGG TGAGCATGAC CACGAAAGGC GATCAGCTTC TCGACAGCCC GCTCGCCAAG
ATCGGCGGCA AGGGCTTGTT TGTCAAAGAG CTGGAGCTGG CGCTCATGGA TGGCCGCGCG
GATATCGCCG TGCATTCCAT GAAAGACGTA CCCATGCGCT TCCCCGATGG GCTGGAACTG
ATCGCCATCC TTGAGGGTCA TGATCCCCGC GATGCCTTTG TTTCAAACGA GTACGAATCG
CTGGCCGCCC TCCCAGCCGG CGCGGTGGTC GGTACCTCAA GCCTGCGACG GGAAACCCAG
ATCCGCTCGC GTTATCCGCA GTTGGAAATC AAAATGCTGC GTGGCAATAT TCAGTCACGC
ATGGCCAAAC TCGACCGCGG AGATTACGAC GCGATCATTC TCGCCGCCGC CGGCCTCAAG
CGTATGGGCT ACGATGCCCG CATCCGTGCC GAACTGAGCC CGGAAGAATC ACTGCCCTCT
GTCGGTCAAG GCGCACTGGG CATCGAGGCA CGGTCGGATG ATGCCGCCAT CCACGCCCTT
ATTGCACCAC TGATTCATGC CGCAACCACC ACCCGCGTGT TGGCTGAGCG TGCGTTTAAC
ACCCGTTTGA ACGGCGGCTG CCAGGTACCC ATCGGCGGGT ATGCCATGTT GCAGGACGAC
GGCAATCTGT GGCTTCGCGG CATGGTCGGG CGCCCGGATG GCACGCTCAC CCTTCGCGAT
GAAATCACTG GTGCGGCGAC TGAAGGCGAA GCACTGGGCG TTGCACTGGC TGAACGGATG
CTGGCCGCGG GGGCTGACAA AATCCTGGCC GAAGTCGGTA TTCATGCTGA TCCGGCCTGA
|
|---|
| Protein sequence | MTPTAPSVDL IRIATRESPL AMWQTEFVAD ELRRLHPGLR VELVSMTTKG DQLLDSPLAK
IGGKGLFVKE LELALMDGRA DIAVHSMKDV PMRFPDGLEL IAILEGHDPR DAFVSNEYES
LAALPAGAVV GTSSLRRETQ IRSRYPQLEI KMLRGNIQSR MAKLDRGDYD AIILAAAGLK
RMGYDARIRA ELSPEESLPS VGQGALGIEA RSDDAAIHAL IAPLIHAATT TRVLAERAFN
TRLNGGCQVP IGGYAMLQDD GNLWLRGMVG RPDGTLTLRD EITGAATEGE ALGVALAERM
LAAGADKILA EVGIHADPA
|
|---|
| |