| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1978 |
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| Symbol | |
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| ID | 8535137 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 2113162 |
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| End bp | 2116641 |
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| Gene Length | 3480 bp |
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| Protein Length | 1159 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 646384360 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003263847 |
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| Protein GI | 261856564 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCCCA CCAGAACCGT TCCATTCGTC GCTCCGAAAT CATCGAACGA CCCGCTATTC
CTCCGCAGTG CCAGCTTTAT CGGCACAGCC TTCAGCTTGG CCGAATTTGC CCGGCGCACC
CCGCAGGCAC TTTTGGTCAT CACGCCCGAC AGCCGTCAAG CCAACGAGTT GGCCGAGGCG
CTGGCTTTAT TCGACTTCCC TGCGGATATT TTCCCTGACT GGGAGGTGTT GCCCTACGAT
CGCTTCTCGC CGCATCAGGA CCTGATTTCC GACCGGCTCG CCCGACTCTG GCATTTGCCG
CGCACGCAAA GTGGTATCAC TCTGATCGCC GCGCCAACCG TGTTACAGCG TCTGGCACCG
CCTTCGTTCG TCACCGGCCA CGGTTTTTTG CTCAAGGCAG GCGACACCCT CGATCGTGAG
GCCTACCGCC AGCAACTCAC CGATGCGGGG TATCTGGCAG TTAGCCAAGT GGTGCAACCC
GGCGAATTTG CGCTGCGCGG CGGACTGATC GATGTGTTCC CAATGGGCAT GAGCCAGCCG
GTGCGGATCG ATCTGTTCGA CGATGAAATT GAAACTCTGC GGCTGTTTGA TCCGGAAACC
CAACGCTCGG CCGATCCGGT CGCAGAAATC ACCCTGCTTC CCGCGCGTGA GTTCCCGCTC
AACGAAGAAG GCATTGCCCT GTTTCGCCGT AATTGGCGCA ACCGCTTCGA GGGTGATCCG
ACCCGCAGCC CTGTGTACAA ACAAATCAGC GAGGGCTTGA TTCCGGCGGG CATCGAAACC
TATCTGCCTT TATTTTTTGA ACATACGGGT ACCCTGTTCG ACTATCTGCC CAAAGACGCC
CTGTTGTTTA CGCTGCCCGG CGTCGATGAG GCATTAGCCA ATTTCATCGA AGACACCATC
GCCCGCTTTA CCCAACGCGC CGGGGATGTC AGCCACCCAA TCCTACGACC AGACGAGCTT
TATCAAACTG CCGAGCAATA CCAGCAACAG ATAAAAAGCT GGCCGCGGCT GATCACGCTG
GATACAAACG ACCCGACCAT GCCGCAGGCC ATCGTCCTGC CACATCAACC GCTGCCGCCC
ATGAGCGCGC CGGCACCCCG CTTGGCGCAA CGAGGAGAAG CCGAGCTCCT CGGTCTAACA
ACATTTATAG AGACCTTCAC CGGACGTGTT CTGGTGACGG CGGAAAGCCC GGGCCGACGC
GAAGCCTTGG GCGAATTACT ACAAAAAGCA GCGCACCCCG TCACTGTTTT CGAACACTTT
GGGGATTGGT TGCGCAGCGA TGCGGGTCTG GGATTGCTGG TCTCACCCAT CGAACACGGG
GCCATCATCC ATCTGCCCGA TGCGCCCGTC GCGCTGGTGA CCGAAACCGA TCTTTTTGCT
GAACGCGTGG CACAGCGCCG CAAATCCAGC GCGCGCACCC GCGATGCCGA CGCGCTGATC
AACAACTTAA ACGAACTGGC CGAAGGCGCA CCCGTGGTGC ATGAAACCCA CGGCGTCGGG
CGATTTGGTG GCTTAGTCAC GCTGGAAATG AACGGGCTGG CGCAGGAGTT TCTGATCCTG
TATTACGCCG GAGACGACAA GCTCTACGTA CCCGTTTCTT CACTGGAGCT CATTTCCCGC
TACACCGGCG GCAGTGAAGA AACCGCGCCG CTGCATAGGC TTGGCAGCGG CCAGTGGGAA
AAGGCCCGCA AGCGCGCCGC CGAACAGGTA CGCGATGTGG CCGCCGAACT ACTGGACATT
CACGCCCGGC GCGCCGCCAA ACGCGGGCAG GCGCAGCCCA CGCCCGAGGA AGAATACGCC
CGATTCGCCA ATAATTTTGC CTTTGAAACC ACGCCCGATC AGCAATTGGC GATCGATAGT
GTGCTGGCAG ACATGGCACG CACGCAACCG ATGGATCGGG TGGTATGCGG CGATGTCGGT
TTCGGCAAAA CGGAAGTCGC CATGCGGGCG GCCTTCGTGG CCGTGATGAA TGGCAAACAG
GTCGCCGTGC TGGTGCCGAC CACGCTGTTG GCCGAACAGC ATTTGCGTAA TTTCCGCGAC
CGTTTCGCCG GCTGGCCGAT CAACATCGAA GGCCTATCCC GCATGAGCAA TGCCAAAAAA
ACCACCGAAG TGCTGGCCAG CGTGGCATCC GGCAAGGTTG ATGTGGTTAT CGGCACGCAC
AAGCTGCTCA GCGACCATTT GGATTTCAAG GAACTGGGCT TGGTCATCAT TGACGAGGAA
CAACGGTTTG GCGTACGCCA CAAGGAACAG CTCAAGCGCC TGCGCGCCGA GGTCGATCTA
CTGACTCTCA CGGCTACGCC GATTCCACGC ACCCTGAACA TGGCGCTCTC CGGGATACGG
GATCTGTCGA TCATCGCCAC GCCGCCGCGT GAACGGCTGT CGGTCAAAAC CCTGCTCTTG
CGCTGGGATG ATGCCCAGAT TCGCGAAGCG GTACAGCGCG AACTCAAGCG CGGCGGACAG
GTGTATTTTC TGCATAACGA GGTGCGCAGC ATCGAGCGGA TGGCCAAGCA ATTGGCCGAT
CTGATTCCCG AAGCGCGGAT TGCCGTTGCC CACGGCCAGC TCTCGGAGCG CGGGCTGGAG
CAGATCATGG CCGATTTCTA TCATCAGCGG TTCAATGTCC TGCTTTCGAC CACCATCATC
GAATCGGGCA TCGACGTGCC CACCGCCAAC ACCATTTTGA TCAATCGTGC TGATAAATTC
GGCCTTGCCC AACTGCACCA ATTGCGCGGG CGGGTTGGCC GGTCGCACCA CCGTGCCTAT
GCCTATCTCA TCACGCCGGA ACCGGCGCAA ATGACCCCCG ATGCCGTCAA ACGCCTCGAT
GCCCTGGCGG CACTCGAAGA ACTGGGCGTT GGCTTCACGC TGGCCACACA CGATCTGGAA
ATTCGCGGTG CGGGCGAACT GCTGGGCGAT GGTCAATCCG GCCAGATGCA TGAAGTCGGT
TACACGCTGT ACATGGACCT GCTCGATCGC GCCGTCAAAG CGCTTAAATC GGGCAAACAA
CCCGATCTGG CCGGGCCGCT TGAACGCCAG ACCAGCGAAG TCGATCTTGG CCTGCCCGCG
CTCATTCCCG CCGATTTCGT CGCCGATGTC CACACGCGCT TGATTCTGTA CAAGCGCCTG
GCAAACTGCG CCGATCAAAC CGAGATAGAC CGCATGAAAG TCGAGCTGAT CGACCGCTTC
GGCCTGCTGC CGGATGCCAC GCAAACGCTG ATCGAAACCC ATCGGCTGCG CTTGCTCGCT
CGTGGCATCG GCATCAAGAA AATCGAATGT GCCAGCGGCG GCGCGCGCCT CGTGTTCGGT
GAACAGGCCA CCATCGATCC GGTCAAACTG GTCAAACTCA TCCAAACCGA ACCGAATCGC
TACCGCCTTA CCGCCGATAC GCTCAAGGTC ACACGAGCGG AAAACGAGCC AGCTTGGGAT
GATCTGCCTG CGCGCAACCA AGTTATCCAG CAACTCATCA AACAACTGGT AGCCCAATGA
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| Protein sequence | MAPTRTVPFV APKSSNDPLF LRSASFIGTA FSLAEFARRT PQALLVITPD SRQANELAEA
LALFDFPADI FPDWEVLPYD RFSPHQDLIS DRLARLWHLP RTQSGITLIA APTVLQRLAP
PSFVTGHGFL LKAGDTLDRE AYRQQLTDAG YLAVSQVVQP GEFALRGGLI DVFPMGMSQP
VRIDLFDDEI ETLRLFDPET QRSADPVAEI TLLPAREFPL NEEGIALFRR NWRNRFEGDP
TRSPVYKQIS EGLIPAGIET YLPLFFEHTG TLFDYLPKDA LLFTLPGVDE ALANFIEDTI
ARFTQRAGDV SHPILRPDEL YQTAEQYQQQ IKSWPRLITL DTNDPTMPQA IVLPHQPLPP
MSAPAPRLAQ RGEAELLGLT TFIETFTGRV LVTAESPGRR EALGELLQKA AHPVTVFEHF
GDWLRSDAGL GLLVSPIEHG AIIHLPDAPV ALVTETDLFA ERVAQRRKSS ARTRDADALI
NNLNELAEGA PVVHETHGVG RFGGLVTLEM NGLAQEFLIL YYAGDDKLYV PVSSLELISR
YTGGSEETAP LHRLGSGQWE KARKRAAEQV RDVAAELLDI HARRAAKRGQ AQPTPEEEYA
RFANNFAFET TPDQQLAIDS VLADMARTQP MDRVVCGDVG FGKTEVAMRA AFVAVMNGKQ
VAVLVPTTLL AEQHLRNFRD RFAGWPINIE GLSRMSNAKK TTEVLASVAS GKVDVVIGTH
KLLSDHLDFK ELGLVIIDEE QRFGVRHKEQ LKRLRAEVDL LTLTATPIPR TLNMALSGIR
DLSIIATPPR ERLSVKTLLL RWDDAQIREA VQRELKRGGQ VYFLHNEVRS IERMAKQLAD
LIPEARIAVA HGQLSERGLE QIMADFYHQR FNVLLSTTII ESGIDVPTAN TILINRADKF
GLAQLHQLRG RVGRSHHRAY AYLITPEPAQ MTPDAVKRLD ALAALEELGV GFTLATHDLE
IRGAGELLGD GQSGQMHEVG YTLYMDLLDR AVKALKSGKQ PDLAGPLERQ TSEVDLGLPA
LIPADFVADV HTRLILYKRL ANCADQTEID RMKVELIDRF GLLPDATQTL IETHRLRLLA
RGIGIKKIEC ASGGARLVFG EQATIDPVKL VKLIQTEPNR YRLTADTLKV TRAENEPAWD
DLPARNQVIQ QLIKQLVAQ
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