| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1816 |
|---|
| Symbol | |
|---|
| ID | 8534974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 1951584 |
|---|
| End bp | 1954052 |
|---|
| Gene Length | 2469 bp |
|---|
| Protein Length | 822 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646384198 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
|---|
| Protein accession | YP_003263686 |
|---|
| Protein GI | 261856403 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA ATCGATTCAC TTCATTGGCA GCCGTCGGTA TTGGGATACT GGTTACAATC
CTTGCTGTAA GTTTTTTTAT TGTTGAACGC AATTTGATGT TGCAATCATT GGCTGATGAT
CTGAATCAGA ATTTATTTTA TATCGAAAGT GATCTTCGCC ATACGCTTGG TGAAAGTCCA
ATCTCTCAGA TACAGACCGT GCTCGATCGG GCTGTGGCAG TCAATCAATC GTTGTCGGTC
ATTTCTGTTT CGGTTGATGG CGTGCATATC AGTGTTTCTT CTTCGCGGTC TTTGGTTGGC
CAGTTGCTAG GGAAAAATTA TTTTCCCATG ACCGATTTGG CGCAGGGTTT TGTTAAAGGA
CATGTTCATT ATCAGAAAAC AGTAAATTTT TACGAAAATA ATACAGATGC GAATCAAATT
GTATTGCTGA TTACGCTAGA TAGTCAGTAT GTTTTTGATC GCATGAACCG GATCGCATTC
TTTTATGGAT TTAGTCTATT TATTGCCTTG GGTCTGATTG CCATAGCCGT TTATATTGTT
GCGGATAGAA TAATTACCGT GCCGTTCGTG CGGATCATAA ATGATGCGCG GGATGGAAAT
GCACGGCTTG GTTATTTTTT TATCGACGAG TTGAGTGAGT TGAACCGAAC ACTCAATGAT
ACATTCGGCT CTTTACGCCA AAAGCAGTAT GAATTAAAGC AGTCGCTGGC GCGTACCACT
TACCTCGATA GCGTATTACG GACAGTGGCT GATATTAATC AGCTGCTTAT TACGTCAAAA
AATGTCCGAG AATTAATGGA TCAAAGTGTG AGTCGGCTCG CGCGTCATCC CGGCTATAGC
GTCTGCATGA TCTTGCGAGC GGAGCAGGCG CAATTGATGG TGCGTGCCTG CTCTATTAAT
GAGGATAATC CATTATGTCT CGGGCGTTTG ATGACCGACG GTGCCGAGCT CGATGTGGGA
AATCCGTTTA TCCAAGCGTT TATGACCAAG CGAGCCGTCG TGGTTGAGCA GATATCGCAT
GATGCTACGG CGCCCGATTT ACCTCGTGCA CCCTGGCAGT TGCTGGCGGC TCAAAAAGAT
GCAGGTTCCG TTATTGCGCT TCCGCTTATC TCAAATGTTC ATGATGATCC GATGGGCGTG
CTGGTTGTCT TCGCATTGCG TGCGTCAGGT ATTGATCTGC AGGAAATTGC GATGCTGGAG
GAGCTTGCGG GGGATATCGG CTTTGCCATC CGAGCATTTG AATATCGCGA ACAGTTACAA
CATCATCTGA CGACCGATGC AGATACCGGC TTGCCGAATC GAGTGGCATT TATCGACCAA
ATGAATACCA ACTCCGGTGG TTTGATCGGT TTGATCAATA TTGATCGTTT CAGTGATATT
AACGCTGTCT ATGGTGTGGA TATCGGTGAT GCGCTCCTGA AAAAGTATGG ACTGTGGTTG
AAAGCGCGTG CCCAAGGCCG GGAAGATATT CAGCTGTACA AAATGGGGGG TGATGAATTT
GCGCTGTATT TCAGATCTGC CGAATCGCTA TCCGAAGTCA GGCTCTTCTT TGTCGATTTG
ATCGCTGCAA CGGCTAATAC AGCATTCATG GTGGCGGGCG TGGAGATCGT GCTGACCATC
ACGGTGGGTG TGGCCCACGG CGTTGATCGT GGTGTGGCCC ATGCTTCGGC TGCGATCAAG
CAGGCTAAAT TGGATCATCA GAGCATTGGC CTGTTTGATG GTTTGGATTC GACGAGGCAG
CAGGAAAACA ACATTGCCTG GTACAAGCGA ATCAGAGATG CCATCGAAAC ATCGCGGATC
GTGCCTTACT TCCAACCCAT CGTGGATAAC AAAACGCAAA AAGTGACCAA GTATGAGGCG
TTGATCCGCA TGATCGACAC GGATGGTCAG GTCATCAGCC CATACCAGTT TCTGGATGTT
GCGAAGAAAA CCAAACTCTA TAGCCAGTTG ACCCGGATGA TGATCGACAA GGTGCTGGAC
GTGTTCAAGG AAAGCACGAT TCCGGTCAGC ATCAATCTTT CGACCGAAGA TTTGATGAAT
CAGGAATTAT CGGAGTACCT CGCGCAGCGG TTAACGGAAA CCGGCATGGG CCATCTGCTC
GTGTTTGAGA TTCTGGAAAG CGAAGGTGTG AACAACTACG AGGTTGTCAG TGCCTTTATT
CAACGGTTCA AGGCAAAAGG ATGCCTGTTC GCCATCGATG ACTTTGGTTC CGGCTATTCG
AACTTCGATC ATCTGATCAA GTTGGACATG GATATCCTCA AGATCGATGG CAGCTTGATC
AGGACATTAC CGCATGATCG TAATTCGCAG ATTATCGTGC AGCACATCTG CGATTTTGCG
CATGAAATGG GTATTCGGAC GGTGGCGGAA TTCGTATCCA ACGAGGCTAT TTATCACCAA
GTCTGCGAGA TCGGTATCGA CGACTCGCAA GGCTATTACT TCTACCCGCC GCTTGAGCGC
CCTTTTTAA
|
|---|
| Protein sequence | MKINRFTSLA AVGIGILVTI LAVSFFIVER NLMLQSLADD LNQNLFYIES DLRHTLGESP
ISQIQTVLDR AVAVNQSLSV ISVSVDGVHI SVSSSRSLVG QLLGKNYFPM TDLAQGFVKG
HVHYQKTVNF YENNTDANQI VLLITLDSQY VFDRMNRIAF FYGFSLFIAL GLIAIAVYIV
ADRIITVPFV RIINDARDGN ARLGYFFIDE LSELNRTLND TFGSLRQKQY ELKQSLARTT
YLDSVLRTVA DINQLLITSK NVRELMDQSV SRLARHPGYS VCMILRAEQA QLMVRACSIN
EDNPLCLGRL MTDGAELDVG NPFIQAFMTK RAVVVEQISH DATAPDLPRA PWQLLAAQKD
AGSVIALPLI SNVHDDPMGV LVVFALRASG IDLQEIAMLE ELAGDIGFAI RAFEYREQLQ
HHLTTDADTG LPNRVAFIDQ MNTNSGGLIG LINIDRFSDI NAVYGVDIGD ALLKKYGLWL
KARAQGREDI QLYKMGGDEF ALYFRSAESL SEVRLFFVDL IAATANTAFM VAGVEIVLTI
TVGVAHGVDR GVAHASAAIK QAKLDHQSIG LFDGLDSTRQ QENNIAWYKR IRDAIETSRI
VPYFQPIVDN KTQKVTKYEA LIRMIDTDGQ VISPYQFLDV AKKTKLYSQL TRMMIDKVLD
VFKESTIPVS INLSTEDLMN QELSEYLAQR LTETGMGHLL VFEILESEGV NNYEVVSAFI
QRFKAKGCLF AIDDFGSGYS NFDHLIKLDM DILKIDGSLI RTLPHDRNSQ IIVQHICDFA
HEMGIRTVAE FVSNEAIYHQ VCEIGIDDSQ GYYFYPPLER PF
|
|---|
| |