| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1682 |
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| Symbol | |
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| ID | 8534840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 1806364 |
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| End bp | 1809240 |
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| Gene Length | 2877 bp |
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| Protein Length | 958 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646384066 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003263554 |
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| Protein GI | 261856271 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.532324 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCTCG AAACTCTTAT TTTGATTTTC ACCGCCGGAT TGATGGCGTA TGCGACCGTG
CAGCATGCCA CTTCCGCCTT GGAAAACCCG ATAGATAAAG TGCAATTCAT TTTTGCCGGC
ATCACGGCAT TGATCATCCC GTTTGCGTTT TTTCAAATTT TGATGATGCA GGCCACCACT
GAATCGGATT TCATCTGGGC GCTCAAGGCC AATCTATCTG CTGGCCTGCT TATCGGGGCA
CTTCTCCCTT GGTTCGCCGC GATCTATACC CAACGGAAGA CGCTATGGCA CTGGGTCCTG
AGCCTAGCGT CGCTTTCCTT GGCTATCGCC AATCTCTGGC AACCGTACAG CCTTCAATAC
AACCTGTTTT CAGGGATAAG CTCAAAGCAG ATGCCCTGGG GAGAAACTTA TACCGACGGT
ATCGGGACCA GTGGTTCTTT GAGTTATGTT GCAGCCACCG TCGTAGTGCT CATCTACATC
TACTGTCTTT ATGCATTTTG GCGCCACTAT CGACACAAGT GCCGCTGGGT AGATTTGATC
TTGTTCTTGG CATTTACGCT CTCATTCATT GCCACGATCA TCGGGATTTT GATTCGCTTG
TCCATCTTGG ACTGGATACT ACCGGGTCCC GTCGGGTTTA TCGGCATGGT CCTGGCTATG
AGCATAGCCT TATCCATTAA TAAGAATCAT CGGCTCCAAT CCTCGGAAAA GCGTTTTCGA
ACACTGATTG AACAGTCATC GTTCGGGATT CAGTTGGTTT CAGTCCACGG GAACATAGAG
CTCACTAACC CAGCATGGCA AAAAATGCGA GGGTTAATCG CCAACGACTT TGATCAAGGC
CCCATCAGCA GAGACCATTA TGTGCTCCGT CAAGGGCTGA TGCCTTTTAT CCACCGTGGT
TTTGCCGGTG AGTCAGTCGA TATCCCTCCG CTTCGATGGG AAACCCCCGA GCCGAACGCC
GAGTACCATT CAAATGCAAC ACGTTGGATT CAAACAAAGA TCGGCCCGAT CAGAGATGAG
AACGGTTCGG TATCCCATAT CATTCTGGTG CATGAAGACG TCACCGAAGA GCAGCAGGTT
GAAACGGCCA TTCATAAAAT CGCTGCGGGT GTCGCTTCGC CATCGGATCA GCAGTTCTTT
CAGCAAATGG TTGTCAGTCT TGTTGAGTTA TTTCATGTCG ATGCCGCATT CATTGGTGCC
TTGGATGAAA CGGACCCACA AAAATTAACC ACACTGGCCT TGTACTCTGG CGGAACGCTG
CAGGAAAACC TTCGGAACTA CCCCTTTGAT GCGAAATTCA ATTGTCTGAA TCCTAATCAG
CAACTCGCGG ATGTTTCCGA CGCGCCAGCG GTTTGCCCAG TTCCAGATCT TCTGGCACAA
ATCGGCATTC AACATTATCG ATGCGCGATG TTATGCGACA ACAAAAACGA ACCGACCGGC
CTGCTTGTTC TGTTGAATCG ATCGCCTGCT AATCTCTCGA AAATAAATCC CGATATTCTG
GCAATTTTTG TTGCACGTGC GGGGGCCGAA GTCCAACAAA TCAAGGCAGA TCAACATATC
CGCCAGCTAG CTTATGAAGA CTACCTGACC GGTTTAAGCA ACCGTGCCCT CTTTCACCAA
CGGCTGAGCC AGACCCTCGC CGAAGCCCGA TCGTCCATGC ATCTCGGGGC ACTTTTACTT
ATCGATCTCG ATCATTTCAA GACCATCAAT GACGCCCTTG GGCACGATGT TGGCGACGAC
GTACTCAAAG CCGTTGCCAT CCGAACCAAA GAAGCAACGG ATGAAAAAAC GCTACTTGCG
CGCTTTGGCG GGGATGAATT TGTCGCATTG ATGTTGCTCG ACACCACCGT GATCGATACG
GCAGAGCAGC TGGCTAGTAA AACGGCAAAA CATATTCTGG ATGCACTCAA AGCGCCACTA
TCGGTAAATG GGCGCGATTT TTCGGTGGGC GCCAGTATTG GAGTCGTTGT TTTTCCGCAA
GAGAATGAAA CCGAACTCGA TATTCTGCGC CATGCCGATA TGGCCTTATA CAAGGCTAAA
AAACACGGAC GCAATAACGT TCAGTTGTTT AATCCAAGCC TGCAGATTGC AGCGACTACT
CGACTCAAGC TGGAAGAAGG TTTGCGCGCT GCTGTTGGCA ACAACGAATT AAGCCTTAAC
TACCAACCTC AAGTGAATAT AGACGGTTGT TGTATCGGTG TCGAAGCGCT GTTGCGCTGG
CATCACCCAG AACTGGGCGT CGTCTCGCCC GATGAGTTCA TCCCCATTGC CGAAGAAACC
GGCCTGATCC ATCCCATCGG TCTATGGGTA CTTGAGCAGG CGTGCAAAGA TCTCAGTCGG
TGGCACGAAA ACGGCATTCC CTTCCAAGGT CACATGGCAG TGAATGTTAG CCCGTGGCAA
CTCATCAGCA CGAACTTTGT AAATGAAATC AAACAGATCG TGGAACAGTA CCCGCTTGAT
CCCAAGCGCA TCATGCTCGA AGTGACTGAA TCCACTCTTT TGCACAATCG ATATGAAAGC
ATCGCCAAAC TCGAACAACT GCGCCATCTG GGATTCAAAA TATCACTGGA TGATTTCGGC
ACAGGGTATT CGTCGCTTTC CTACCTCAAA GATATCCCCC TAGATCAGCT AAAAATTGAT
AAGTCATTCA TTGATGAGTT GGAAAAAACA GATGATGAAC AGCCACTTCT GGCAAGTATT
TATGCCATTG GCATTCACAT GCATCTGGCG ATTATTGCCG AGGGTGTGGA AACACAAAAC
CAGTGTGAAC GATTAATTTC CATGGGCGGT AAGGCGTTTC AGGGCTATCT GTTCAGCAAA
CCTCTGACAG AGTTAGATTT AATCGCGTGG TTGAGGGGGA CTCAACGTAC CCGATAA
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| Protein sequence | MPLETLILIF TAGLMAYATV QHATSALENP IDKVQFIFAG ITALIIPFAF FQILMMQATT
ESDFIWALKA NLSAGLLIGA LLPWFAAIYT QRKTLWHWVL SLASLSLAIA NLWQPYSLQY
NLFSGISSKQ MPWGETYTDG IGTSGSLSYV AATVVVLIYI YCLYAFWRHY RHKCRWVDLI
LFLAFTLSFI ATIIGILIRL SILDWILPGP VGFIGMVLAM SIALSINKNH RLQSSEKRFR
TLIEQSSFGI QLVSVHGNIE LTNPAWQKMR GLIANDFDQG PISRDHYVLR QGLMPFIHRG
FAGESVDIPP LRWETPEPNA EYHSNATRWI QTKIGPIRDE NGSVSHIILV HEDVTEEQQV
ETAIHKIAAG VASPSDQQFF QQMVVSLVEL FHVDAAFIGA LDETDPQKLT TLALYSGGTL
QENLRNYPFD AKFNCLNPNQ QLADVSDAPA VCPVPDLLAQ IGIQHYRCAM LCDNKNEPTG
LLVLLNRSPA NLSKINPDIL AIFVARAGAE VQQIKADQHI RQLAYEDYLT GLSNRALFHQ
RLSQTLAEAR SSMHLGALLL IDLDHFKTIN DALGHDVGDD VLKAVAIRTK EATDEKTLLA
RFGGDEFVAL MLLDTTVIDT AEQLASKTAK HILDALKAPL SVNGRDFSVG ASIGVVVFPQ
ENETELDILR HADMALYKAK KHGRNNVQLF NPSLQIAATT RLKLEEGLRA AVGNNELSLN
YQPQVNIDGC CIGVEALLRW HHPELGVVSP DEFIPIAEET GLIHPIGLWV LEQACKDLSR
WHENGIPFQG HMAVNVSPWQ LISTNFVNEI KQIVEQYPLD PKRIMLEVTE STLLHNRYES
IAKLEQLRHL GFKISLDDFG TGYSSLSYLK DIPLDQLKID KSFIDELEKT DDEQPLLASI
YAIGIHMHLA IIAEGVETQN QCERLISMGG KAFQGYLFSK PLTELDLIAW LRGTQRTR
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