| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1667 |
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| Symbol | |
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| ID | 8534825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 1793675 |
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| End bp | 1794994 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 646384052 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_003263540 |
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| Protein GI | 261856257 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAGA CACCTACTGT CGAGCCCGCG GGCTTGTCTT CAAGCGGAAA ACCTCTGACT
ACCAAAACCG AGCCAAAGCT GGGAATCCGC GTATCCAAAC GCGCCGCTTT GTTGCTCGCC
ATCCCAGTCG CCTTGGCGGG CGGCGTGGTC ATTTACAACA TTTTCTCTCG GGGAGATGAA
CCAACTTTGG CCTCTGCCGA TAAGCCAAAA ACGGTCGAAT CAGCGATGGA TGTGGCAGAA
AGTATCAACC AAAAGGCCGC GCGCCTGGTT GCGCCGAGCC TACCTACCGC TTCAGATCAG
CATAGTGGGT CGGCGGCTAG TGACAAGCCA AATGCCAAAC CAACAACCAA TCAAGCGACC
GCTCCTGATT TAAGCCATGC AACACCATCA AATGAGCAAC CCAAACCCTT AACCCCTGCG
GAACAAGCGG CTCAGCGTTT GGCCGATGAG CGGCTCCAGC GCTTACAACA AGCCATGGAT
GCAGCAACCA AAACCAAATC ATTTCGGGAT GCCAATGGTG GTGCGCCAAT GGATGAACCG
TCCATCAATC GTGGGTCGTT GGGGCAAGTT TCTGGGCTTG GATTGGCGGC AAGTGGTTCT
GGATTCAATC CGAGCAGCCT ATTGGGTAAT GCCGCCGGTC AGGGCACCCA AGGCGATCAA
AAGGACAAAA AAGCCTTTTT GCAGGCCGCC AAGGCTGAAA TCGCCACACC AACTCTGGCC
GCTTCGGTTA AGCCTGCTCA ATCACCTTTT GAAATCAATT CCGGCACCGT TATTCCTGCC
GTGTTGGTAA CCGGTTTGAA CAGCGATTTA CCCGGCGAAA TAATCGGCCA GGTTTCTGAA
AATGTGTTTG ATACCGCCAC GGGCAATCAC TTGCTCATTC CCAAGGGGGC AAAGCTCTTT
GGTCAGTATG ACTCGCAGGT CAGTTATGGC CAGAACCGTT TATTGGTGGC TTGGCAGCGG
GTCATTTTCC CCAATGGCTC AACCCTTGAA ATCGGCGGCA TGGGCGGCGT GGATAAAACA
GGTTCGGCAG GCTTTGAAGG TCAGGTGGAC AACCATTATT GGCGACTGTT CACCGGCGCC
TTGATGACTT CGATTTTCAG CGCCGGGATT CAGCTTTCAC AGCCGCAAAC CAACAACAAC
AATGGCGTGC AGGGAACGGG ACAAACCATT GGCGCAGCCG TGGGGCAACA AATTGGCCAA
TTGGGCGTTT CTATTTCGCA AAAGAATCTG GCCATCCAGC CGACCATTGT CATCCGGCAA
GGCTATCGCT TTTCGGTGAT GGTTGATAAG GATGTTGTTT TTCCGGGAGC GTATCAATGA
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| Protein sequence | MSKTPTVEPA GLSSSGKPLT TKTEPKLGIR VSKRAALLLA IPVALAGGVV IYNIFSRGDE
PTLASADKPK TVESAMDVAE SINQKAARLV APSLPTASDQ HSGSAASDKP NAKPTTNQAT
APDLSHATPS NEQPKPLTPA EQAAQRLADE RLQRLQQAMD AATKTKSFRD ANGGAPMDEP
SINRGSLGQV SGLGLAASGS GFNPSSLLGN AAGQGTQGDQ KDKKAFLQAA KAEIATPTLA
ASVKPAQSPF EINSGTVIPA VLVTGLNSDL PGEIIGQVSE NVFDTATGNH LLIPKGAKLF
GQYDSQVSYG QNRLLVAWQR VIFPNGSTLE IGGMGGVDKT GSAGFEGQVD NHYWRLFTGA
LMTSIFSAGI QLSQPQTNNN NGVQGTGQTI GAAVGQQIGQ LGVSISQKNL AIQPTIVIRQ
GYRFSVMVDK DVVFPGAYQ
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