| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_1649 |
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| Symbol | |
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| ID | 8534807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 1779991 |
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| End bp | 1782462 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 646384034 |
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| Product | TRAG family protein |
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| Protein accession | YP_003263522 |
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| Protein GI | 261856239 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAGA ACCCCTCTTC CCCGACTGAG CTTTACAACC TCTCCAATAA ATCGCCCGAG
CCAGGCGGCT TGCAATTAAT GGGCGTGGCC GCTGGCTTGC TCATGTTGTT TACAGTGATG
GTTGTCACGA CACAATACTT AGCATCTGCT TTGGATTATC AGGCAGCTTT GGGTTCGCCA
CTGATCGGCA AGCTGTACGC ACCTTGGATG TTTGCCATCT GGCTGTGGCA ATACGGCAAT
GTGCCAACCC TTAAATCGAT TGTATTTATC GCTTATGTGT TGCTGATTGG TGGGGCTGCG
GTTGCCGTGA TTGGTGCGGC GCTCATCAGC TATTGGTATC GGCGCAAGTT TGGCAATGTC
GGCATGGATT CCCTGCATGG GTCGGCGCAC TGGGCAAGCG AGGATGAAAT CAAGGAAATG
GGGGTGTTCG ATTCCGCTGG GGTATTTATC GGCGCATGGA AAAATCCATG TGGAGATGTT
CAGTATCTGC GTCACGATGG GCCTGAGCAT GTCATGGCCT TTGCGCCGAC TCGCTCTGGT
AAGGGCGTGG GCTTGGTGTT ACCCACCTTG CTGGCATGGC GGCATTCGGC CTTGGTGTAC
GACATCAAGG GCGAGAACTA TGCGCTAACA GCAGGCTGGC GCGAGAAGGA AGCTAACAAC
CGCATTATCC GGTTTTCACC AACCGACATC ACCGGCTCGG CCAGTTACAA CCCTTTGAAT
GAAGTGCGCT TGGGTACCCA GCGGGAAATC GCTGATATTC AGAACCTCGT GACGATGATT
GTTGACCCAG ATGGCAAGGG CATGACCGAC CACTGGGCAA AAACAGGCCA TGCGTTGCTG
GTCGGTACTG TGCTGCATGT GATGTATTCG GAGGAGGATA AAACCTTGCG CGGGGTGGCC
ACATTTCTCT CTGACCCTTC GAGAACCTTG GAAGAATCTC TTGCCGAAAT GATTAATACG
AATCACTTGG GCGATCGGCC GCACCCCGTC GTGGCCGCCT CAGCGCGCGA CATGATGAAC
AAGGCTGATA ATGAACGCTC CGGCGTGCTT TCGACCGCCA TGTCGTTTCT TACGTTGTAC
CGCGACCCCA TCGTGGCCTC AAACACCGAC AAATCCGATT TTGCCGTGGC CGACTTGATG
AATGCCGAGC AGCCGGTATC GCTGTATCTC GTGGTGCCAC CTTCAGATAA AGACCGCTTA
AAACCCCTGA TTCGTTTGAT GATTAACCAG ATTATCCGCA ACCTGACCGA ATCGATGGAG
TTCAAAGATG GCCGTTCGGT GGCGGGTTAT AAGCATCGAT TGTTGCTGAT GATTGATGAG
TTTCCCTCCT TGGGTCGGCT GGATATTTTT CAGGAAGCCT TGGCATTTAT CGCCGGTTAC
GGCATGAAGG CGTATCTCAT TACCCAAGAT TTAAGCCAGC TTTACGCGGC GTATGGCAAA
GATGAGTCGA TCATGTCGAA CTGCCATATA CGAATCGCCT ACGCGCCAAA CAAGATCGAA
ACAGCCGAAT TGCTCAGCAA AATGAGCGGC ACCACCACGA TCATCAAGCG GCAAGAGAGT
TTTTCAGGTG GGCGCACCAA GCTAATGCTC GATCAAATCA GCACCAGCAT TCAGGAAGTT
CAGCGGCCAT TGCTCACGCC CGATGAAGCC TTGCGACTGC CGGGGCCGCA AAAGGATGGC
CAAGGCAACA TCATGGAAGC GGGCGATATG CTGATTTTTG TCGCAGGCAA AGCGCCGATT
TACGGCAAAC AAATTTTGTA CTTCAAAGAC CCGCTCTTTC TGGCACGCGC CAAGTTCCCC
GCACCGAACG CGCGCCCAGT GGCAGCCGCT TTAAGCGCGC CAGCCCACGC AGCCGTGGCG
GAAATCGATG AACAAACTCC GCAACAACCA GCGCCACTCA AGGCCGCGCC AAACTCAGTC
GCACCGCCTT TAGGGAAAGG ACAAACCGGC GTTGCGTTTG CGCCGTTATC GCCCACGTCC
AGCTCGGAAA ACCGTGAAAC CAGTGCCGTG CAGACGACAC CAATGACCGC CTCGACATCG
GCCACGCTGA ACAGCGCAAC ATTTGCGCCT GCTCATTCCC CAGCCGAAGA ATCCAAACCG
CATGAAAACA TCACAGCCGA ACCAGAATCA GAATCGCATG GGGAAGAAAT GACGGCGGAT
GGTTTTGCCG TAATTCCAGA AGAAACGCAG GATTTGCTTC CAGCCGATTT AGATACGGGT
GAGCCGGATG CCGAACGGTA TGGCACCGAG GATTTGGTGA TTTGTCATGC CGATGAGCCC
GTCCGCGTAG CGCGCCAGCC GGATGACTTA TTAAACGAGT TCAAAGCCAT CACAGAAAAT
GCCGAGATGG ATAGCGCCGA GCAGGCATGG TTCGCTGTGG CAGACGATAC ACCCGATGTC
AGCGAATTAC GCGAAACCGA GATTAGCGAT GAAGGAACCG ATGCCATCTT CGATATTTTC
AGCCCGCGAT AA
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| Protein sequence | MAKNPSSPTE LYNLSNKSPE PGGLQLMGVA AGLLMLFTVM VVTTQYLASA LDYQAALGSP
LIGKLYAPWM FAIWLWQYGN VPTLKSIVFI AYVLLIGGAA VAVIGAALIS YWYRRKFGNV
GMDSLHGSAH WASEDEIKEM GVFDSAGVFI GAWKNPCGDV QYLRHDGPEH VMAFAPTRSG
KGVGLVLPTL LAWRHSALVY DIKGENYALT AGWREKEANN RIIRFSPTDI TGSASYNPLN
EVRLGTQREI ADIQNLVTMI VDPDGKGMTD HWAKTGHALL VGTVLHVMYS EEDKTLRGVA
TFLSDPSRTL EESLAEMINT NHLGDRPHPV VAASARDMMN KADNERSGVL STAMSFLTLY
RDPIVASNTD KSDFAVADLM NAEQPVSLYL VVPPSDKDRL KPLIRLMINQ IIRNLTESME
FKDGRSVAGY KHRLLLMIDE FPSLGRLDIF QEALAFIAGY GMKAYLITQD LSQLYAAYGK
DESIMSNCHI RIAYAPNKIE TAELLSKMSG TTTIIKRQES FSGGRTKLML DQISTSIQEV
QRPLLTPDEA LRLPGPQKDG QGNIMEAGDM LIFVAGKAPI YGKQILYFKD PLFLARAKFP
APNARPVAAA LSAPAHAAVA EIDEQTPQQP APLKAAPNSV APPLGKGQTG VAFAPLSPTS
SSENRETSAV QTTPMTASTS ATLNSATFAP AHSPAEESKP HENITAEPES ESHGEEMTAD
GFAVIPEETQ DLLPADLDTG EPDAERYGTE DLVICHADEP VRVARQPDDL LNEFKAITEN
AEMDSAEQAW FAVADDTPDV SELRETEISD EGTDAIFDIF SPR
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