Gene Hneap_1292 details

Gene Information

• Locus tag: Hneap_1292
• ID: 8534446
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halothiobacillus neapolitanus c2
• Kingdom: Bacteria
• Replicon accession: NC_013422
• Strand: +
• Start bp: 1397635
• End bp: 1399407
• Gene Length: 1773 bp
• Protein Length: 590 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 646383682
• Product: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD
• Protein accession: YP_003263174
• Protein GI: 261855891
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
• TIGRFAM ID: [TIGR02857] thiol reductant ABC exporter, CydD subunit

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCAATC CTGCCGCGAT GCAAGACAAG GAACAGATCC GCCAACTGGA TCGATGGCTA 
AGAAGTCAGG CAAAAACGGT AAAACGGCCC CTGAATACAG CCGTTCTGCT CGGCAGTGTG 
AATGGTTTTT TACTGATTGC CCAATGCTGG ATGCTGGCTC AGGTGCTAAA TGCAACTGCG 
ATCGGCCACC AACCGATTAC TGCAGTCTGG GGATATCTGG CAGGCATGAT CGGACTTTTT 
CTGCTGCGAG CCGGGGTAAA TTACGGTAGC CAGCGGTTCA CCTTCGAAGC CGGTGCCCGC 
CTGCGCACCG AACTCAGAGC CAGTATCTTC GATCACATCC ATGCACTCGG CCCGGCATGG 
AGTCGTGATC AACGCTCGGG AGCACGCGCA ACCGAGGTAG TGGATGGCGT CGAAGCACTG 
GATAAATATT TCAGTCTTTA TCTGCCACAA ATGCAGCTCG CCATTATTAT TCCTGCGGCG 
ATCCTGGTTT TTGTCTTCCC GTTCGATTGG ATATCCGGAC TGATTCTGTC CATCACGGCA 
CCTTTGCTTC CCGTATTCAT GATCATCATC GGCAGTCAGA CCGAAAAACT AAATCAGGCG 
CAGTGGCAAA GTTTGTCTCG CATGGGGGCA CACTTTTTCG ACATGATCGA GGGACTGACG 
ACACTCAAGC TGTTTAATGC CGCCCAGCGT GAAGCCCGTT TTATCGGTCA GATCGCAGAA 
GACTACCGCC TGCAAACCAT GAAGGTGTTG CGCGTCGCCT TTCTCTCTTC GATGGTGCTT 
GAATTTCTGG CTGCCATCAG CATCGCCATG GTGGCTGTTT ATGTCGGCTT TCGATTGATG 
TACGGCGACA TCCATTATCT CAACGGCATT TTCGTGCTCT TGCTTGCGCC GGAGTTCTAT 
CTCCCCTTGC GCAGCATGGG AACGCAATTT CACGCGCGAA TGGATGCACT GGGCGCCGTG 
GAGCCGATTA TTGAACTCTT GAATACGCAG CCATCCACCA AGCCGACTGG TGAAATTGAG 
CTGAAACCGG AACATGCGCC TCAGATTACC TTTTCCCATC TCGACTTTGC CTACCCAAAT 
CGGGACGCAG TCATAAGTGG CCTTAACCTC GATTTACGAG CGGGCACGCA CACGGCACTC 
ATCGGCGCGA GTGGCGCGGG AAAATCGACA GTGGGTCAAT TGCTGCTTGG TTTTTTAACA 
CCCACTGATG GCAAAATCCT GATCAACGGC ATGCCGCTCT CTAAGATTTC GCCACCTAGC 
TGGCACAAAC AGGTAGCCTG GTTACCGCAG AATCCAACAC TGTTTCACGG CACCATCGAA 
GATAACATTG CGCTGAATCG TCGTTCGAGC GGTCACGATG ATGCGTTGCA TCAGGCTGCG 
CAAAATGCAC AGGCACTCGA CTTCATCAAC CGCCTGCCAA ACGGGTTCCA GACGATTGTC 
GGGGATCGGG GCCAAGGGCT TTCGGGCGGT GAAATACAAC GCATTGCCTT GGCACGCGCA 
TTTTACAAGG ATGTGCCCGT TGTGCTGCTG GACGAACCTT CTGCCAGCCT TGACCCGGAA 
AGTGAGCGCC TGATCACGGA TGCCATCGCC AGACTATCCT CAGGTAGAAC CATGCTGACC 
ATCGCGCACC GATTGACCAC GATCGAGCGA AGCGATCAGA TCGTGGTACT CGACGGCGGG 
AAAATCATCG AGCAAGGGAC GCACGATGTT TTAATCCAGA CGAATGGTGC CTATGCAGAA 
CGCTACCGGC AATATCGGAG CGCCGGGCTA TGA 

 

Protein sequence

MANPAAMQDK EQIRQLDRWL RSQAKTVKRP LNTAVLLGSV NGFLLIAQCW MLAQVLNATA 
IGHQPITAVW GYLAGMIGLF LLRAGVNYGS QRFTFEAGAR LRTELRASIF DHIHALGPAW 
SRDQRSGARA TEVVDGVEAL DKYFSLYLPQ MQLAIIIPAA ILVFVFPFDW ISGLILSITA 
PLLPVFMIII GSQTEKLNQA QWQSLSRMGA HFFDMIEGLT TLKLFNAAQR EARFIGQIAE 
DYRLQTMKVL RVAFLSSMVL EFLAAISIAM VAVYVGFRLM YGDIHYLNGI FVLLLAPEFY 
LPLRSMGTQF HARMDALGAV EPIIELLNTQ PSTKPTGEIE LKPEHAPQIT FSHLDFAYPN 
RDAVISGLNL DLRAGTHTAL IGASGAGKST VGQLLLGFLT PTDGKILING MPLSKISPPS 
WHKQVAWLPQ NPTLFHGTIE DNIALNRRSS GHDDALHQAA QNAQALDFIN RLPNGFQTIV 
GDRGQGLSGG EIQRIALARA FYKDVPVVLL DEPSASLDPE SERLITDAIA RLSSGRTMLT 
IAHRLTTIER SDQIVVLDGG KIIEQGTHDV LIQTNGAYAE RYRQYRSAGL