| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0701 |
|---|
| Symbol | |
|---|
| ID | 8533838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | + |
|---|
| Start bp | 765357 |
|---|
| End bp | 765983 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 646383089 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003262599 |
|---|
| Protein GI | 261855316 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.212033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACAG ATACGACCCC ATCGGTCACA GAACAAGCCA CGGATCAACC CACGGATCAA
CAATTGGTGT TGCGCGCGCA ACAGGGTGAT CGCCGTGCGT TCGATTTATT GGTGCTCAAA
TACCAGCATC GCGTTCTGCG ACTGGTTGGG CGCTTCGTTC GCGATCAGGA TCAAGCCTTT
GATCTGGCAC AGGAAGCGTT CATCAAAGCC TATCGCGCAC TCGGGAATTT CCGAGGTGAA
AGTGCGTTCT ACACTTGGTT GTATCGAATT GCGGTCAATA CGGCCAAGAT CCAGTTGGTC
GCAGATGCAC GAGGTGGTTA TTCCGTTTCA CTGAACTCTG GCGGCGGAGA TGAGTCTGAT
GAAGCATTAC CCGAGCCGGA AGCTCTTCGT GATCACGCCA GTCCAGAGGA TATGGCCGCT
ACCCAGGAGT TGGAAGCTGA GATTCGAGCC GCTATCAGGG CGCTGCCCGA GGATTTGCGA
ACGGCCTTGA CCCTGCGAGA GATGGAAGGC CTGAGTTATG AAGAAATCGC GGTCGTGATG
AACTGCCCGA TCGGTACGGT GCGATCCCGG ATTTTCCGGG CGCGTGAATC GGTCGAAGAG
CGCATCAAGC CGTTGTTGGA TTCCTGA
|
|---|
| Protein sequence | MATDTTPSVT EQATDQPTDQ QLVLRAQQGD RRAFDLLVLK YQHRVLRLVG RFVRDQDQAF
DLAQEAFIKA YRALGNFRGE SAFYTWLYRI AVNTAKIQLV ADARGGYSVS LNSGGGDESD
EALPEPEALR DHASPEDMAA TQELEAEIRA AIRALPEDLR TALTLREMEG LSYEEIAVVM
NCPIGTVRSR IFRARESVEE RIKPLLDS
|
|---|
| |