| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0657 |
|---|
| Symbol | |
|---|
| ID | 8533793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | - |
|---|
| Start bp | 711964 |
|---|
| End bp | 715680 |
|---|
| Gene Length | 3717 bp |
|---|
| Protein Length | 1238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 646383045 |
|---|
| Product | methionine synthase |
|---|
| Protein accession | YP_003262556 |
|---|
| Protein GI | 261855273 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAA AAATCATCGA ACAACCTGTT TTCGCCCAAC TGCGCGCCTT GATGCACGAA
CGCATCCTGA TTCTGGATGG CGCGATGGGC ACCATGATTC AGAAGCGCAG ACTCTCAGAA
TCTGAGTTTC GGGGGGAACG CTTTGCCGAT TGGCCGGTTG ATCTTAAAGG CAATAATGAT
CTGTTGGTGC TGACCCAACC AAAAGTGATT AGCGATATTC ACCGTGCCTA CCTCGATGCC
GGTGCCGATA TTATCGAGGC CAACACGTTC AACGCCACGC GCATCTCGAT GGCCGATTAC
CAAATGCAGG AACTGGCCTA CGAGATCAAC GTCGCGGCAG CCCGTCTCGC TCGCGAATGT
GCGGATGCCA AAACCCTTGA GACACCCGAA AAACCGCGTT TTGTTGCAGG CATTATCGGG
CCGACGAGCC GAACCGGTTC GATCTCGCCG GATGTGAATG ATCCGGGGTT TCGCAATGTC
ACCTTCGAGG AACTGAGTTC AGCTTACCGC GAATCGGCGG AAGGGCTCAT CGAAGGTGGT
GTCGATATTC TGTTGATCGA AACCATTTTC GACACGCTCA ATGCCAAAGC GGCGGTGTTC
GCGCTGGAAC AGTTGTTCGC GGATCGCGGG CAGCGCTGGC CGGTGATGAT TTCCGGCACC
ATTACCGATG CCTCCGGCCG CACGCTCTCC GGGCAGACGA CTGAAGCGTT TTACAACAGC
CTGCGCCACG CGCAACCCTT ATCCATCGGC CTGAACTGTG CGCTCGGCCC TGATTTGCTG
CGTCAATATG TCGCCGAGCT GTCGCGCGTC AGTGAGTTTC CGGTATCCGT CCACCCGAAC
GCGGGCTTGC CGAATGAGCT GGGCGAATAC GATCTGGAAG CCGACCCCAT GGCGCAACAA
ATCGGCGAAT GGGCGCGCTC GGGGCTTATC AACATCGTCG GCGGTTGTTG CGGCACCACG
CCGGAGCACA TTGCCTACAT GGCCCAGCAG GTCGCGCCGC ATCCCCCTCG CGTACCGCCC
AAGCCCGAGC CCGCCTGCCG CTTGTCTGGG CTTGAGCCGT TCAATATCAC GCCCGAATCG
CTGTTCGTCA ACGTGGGCGA GCGCACCAAT GTGACCGGTT CGGCGCGTTT TCGCCGGTTA
ATCAAGGAAG GAGATTTTAC GACCGCGCTC GACGTGGCCC GTCAACAAGT CGAAGCCGGT
GCGCAGATCA TTGATATCAA TATGGATGAA GGCCTGATCG ATGGCGAAGC GGCGATGGAG
CGTTTTTTGA AGCTGATCGC CTCCGAGCCG GACATCTCGC GTGTGCCGAT CATGATCGAC
AGTTCCAAAT TCGCCGTGAT CGAAAAGGGC TTGCAGTGGG TGCAAGGTAA ACCGATTGTC
AATTCGATCT CGATGAAAGA AGGCGAGGAC ATTTTCCTCG AACACGCGCG CCTGGTGCGG
CGCTACGGCG CAGCGGCCGT GGTGATGGCC TTCGATGAGC ACGGTCAGGC CGACACGGTA
CAGCGGCGCA TCGAGATTTG TTCTCGCGCC TACAAACTAC TCACCGAAGA AGTCGGCTTC
CCGGCCGAAG ACATCATCTT CGACCCGAAT ATTTTCGCGA TTGCCACCGG CATTGAAGAG
CACAACAACT ACGCGGTGGA CTTTATCGAG GGCACCCGCT GGATCAAGCA AAACCTGCCG
CATGCGCTAA TCTCCGGCGG CGTCTCGAAT GTATCGTTCT CGTTTCGCGG TAATGAGCCG
GTGCGCGAGG CCATTCACAG CGTATTCCTC AACCATGCGG TGGCGGCTGG CATGGACATG
GGGATTGTCA ACGCCGGACA GCTGGTCATC GTCGATGACA TCCCCGCCGA ACTGCGCGAA
GCGGTCGAGG ACATCGTGCT CAATCGCCGC GATGATGCCA CCGATCGCAT GCTCGACATC
GCCGAAAAAT ATCGCGGCAG TGGCACGGGC GAGGCCAAAT CCGGTGCGGA TCTCGCCTGG
CGCGAACTGC CCGTCAACAA GCGATTGTCG CACTCGCTGA TCAAGGGCAT CGACCAATTC
GTGATCGAAG ACACCGAGGA AGCCCGATTG GCCGCCGAGC GCCCGTTGCA CGTCATCGAA
GGCCCGCTGA TGGACGGCAT GAATATCGTT GGCGACCTGT TCGGTGCCGG CAAAATGTTT
CTGCCGCAAG TCGTCAAATC CGCCCGCGTC ATGAAAAAGG CCGTGGCGCA TCTTTTACCC
TTCATGGAGG CCGAAGCCGC CGCCGGTGGC TGCGCGGCCG AAACGGCGGG CAAAATCTTG
ATGGCGACCG TCAAGGGCGA TGTCCACGAC ATCGGCAAGA ACATCGTCGG CGTGGTACTG
CAATGCAATG GCTTTGAGAT CGTCGACTTA GGCGTGATGG TGCCCACCCA GAAAATTCTC
GATACCGCCA TTGCCGAACA ATGCGACATC ATCGGTTTGT CCGGGTTGAT TACGCCATCA
TTGGACGAAA TGGTCACCGT CGCCAGCGAA ATGCAGCGCC AAGGATTTAC CCTGCCCCTG
ATGATTGGCG GCGCCACCAC CTCCAAACTG CACACCGCAC TGAAAATTGC GCCGGTGTAC
GAACAACCCG TCGTGCATGT GCTCGATGCC TCACGTGCCG TCGGCGTAGC CGCAAGCCTT
TTGGGCGAAA ACAAAGCCGT CTATGTCCAA GGCATCGCCA ACGAATACGC CGAACTCGTG
GCCCGCCGCA AGGCCAATCA GAAAGAAGCC AAACGGGCCA ATCTGGCCGA GGCGCGCGCC
AACAAACAGG TAATGGATTA TTCGAATTAC ACGCCCGTGG CGCCGAAAAC ACCGGGCATC
ACGGTGTTCG AAGATTATCC GCTCGAAGAC ATCCTGCCCT TTATCGACTG GACGCCGTTT
TTCCAGAGCT GGCAACTCTT TGGTAAATAT CCGGCGATTC TCGACGATGA AAAAGTCGGT
TTGGAGGCGC GCAAACTCTT CGATGACGCA CAAGCCATGC TCAAAACCAT GGTCGAGGAG
AAGTGGGTGA AAGCCAGCGG TGTGATCGGA TTCTGGCCTG CCGCCAGCAT CGACGATGAT
ATCCGCGTGT TCACCGACGA AAAACGCCAA TCGGTATTAA CCACATTGCA TCATATCCGC
CAGCAAATGC CGCGCAGCGG CGGTAAGCCG AACCAGTGCC TGGCCGATTT TGTCGCGCCC
ACCGGCAAGA AAATAAAAGA CTGGATCGGC GGCTTTGCCG TCACCACCGG CCACGGTATC
GAACCGCACA TCGAACGCTT CGAAAAAGCG ATGGACGATT ACCACGCCAT TTTGCTCAAA
GCACTGGCCG ATCGTTTAGC CGAAGCCTTC GCCGAGCACC TGCATTACCG AGTACGTACC
GAATTCTGGG GCTATGCACC CGACGAGCCG ATGGATAACG ACGCCATGAT TGCCGAGCAA
TATCAAGGCA TTCGCCCGGC ACCGGGGTAT CCCGCCTGCC CCGATCACAC CGAAAAAGGC
ACGCTCTGGT CTTTGCTTGA ACCGGAGACC CGCGCGGGCA TTTCCTTAAC GGAGAACTTT
GCCATGTACC CGGGGGCGGC GGTATCCGGC TGGTATTTCG CCCATCCCGA CGCCCGCTAT
TTCGGCACGG GCAAAATCGG CCGCGACCAG GTTCACGATT ATGCCGAGCG CAAAGGCTGG
TCGCTCAAAG AAAGCGAACG CTGGCTGGCG CCGATTTTGG GCTACGAACC TGAATAA
|
|---|
| Protein sequence | MTQKIIEQPV FAQLRALMHE RILILDGAMG TMIQKRRLSE SEFRGERFAD WPVDLKGNND
LLVLTQPKVI SDIHRAYLDA GADIIEANTF NATRISMADY QMQELAYEIN VAAARLAREC
ADAKTLETPE KPRFVAGIIG PTSRTGSISP DVNDPGFRNV TFEELSSAYR ESAEGLIEGG
VDILLIETIF DTLNAKAAVF ALEQLFADRG QRWPVMISGT ITDASGRTLS GQTTEAFYNS
LRHAQPLSIG LNCALGPDLL RQYVAELSRV SEFPVSVHPN AGLPNELGEY DLEADPMAQQ
IGEWARSGLI NIVGGCCGTT PEHIAYMAQQ VAPHPPRVPP KPEPACRLSG LEPFNITPES
LFVNVGERTN VTGSARFRRL IKEGDFTTAL DVARQQVEAG AQIIDINMDE GLIDGEAAME
RFLKLIASEP DISRVPIMID SSKFAVIEKG LQWVQGKPIV NSISMKEGED IFLEHARLVR
RYGAAAVVMA FDEHGQADTV QRRIEICSRA YKLLTEEVGF PAEDIIFDPN IFAIATGIEE
HNNYAVDFIE GTRWIKQNLP HALISGGVSN VSFSFRGNEP VREAIHSVFL NHAVAAGMDM
GIVNAGQLVI VDDIPAELRE AVEDIVLNRR DDATDRMLDI AEKYRGSGTG EAKSGADLAW
RELPVNKRLS HSLIKGIDQF VIEDTEEARL AAERPLHVIE GPLMDGMNIV GDLFGAGKMF
LPQVVKSARV MKKAVAHLLP FMEAEAAAGG CAAETAGKIL MATVKGDVHD IGKNIVGVVL
QCNGFEIVDL GVMVPTQKIL DTAIAEQCDI IGLSGLITPS LDEMVTVASE MQRQGFTLPL
MIGGATTSKL HTALKIAPVY EQPVVHVLDA SRAVGVAASL LGENKAVYVQ GIANEYAELV
ARRKANQKEA KRANLAEARA NKQVMDYSNY TPVAPKTPGI TVFEDYPLED ILPFIDWTPF
FQSWQLFGKY PAILDDEKVG LEARKLFDDA QAMLKTMVEE KWVKASGVIG FWPAASIDDD
IRVFTDEKRQ SVLTTLHHIR QQMPRSGGKP NQCLADFVAP TGKKIKDWIG GFAVTTGHGI
EPHIERFEKA MDDYHAILLK ALADRLAEAF AEHLHYRVRT EFWGYAPDEP MDNDAMIAEQ
YQGIRPAPGY PACPDHTEKG TLWSLLEPET RAGISLTENF AMYPGAAVSG WYFAHPDARY
FGTGKIGRDQ VHDYAERKGW SLKESERWLA PILGYEPE
|
|---|
| |