| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0583 |
|---|
| Symbol | |
|---|
| ID | 8533718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halothiobacillus neapolitanus c2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013422 |
|---|
| Strand | + |
|---|
| Start bp | 624563 |
|---|
| End bp | 628069 |
|---|
| Gene Length | 3507 bp |
|---|
| Protein Length | 1168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 646382972 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_003262484 |
|---|
| Protein GI | 261855201 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTG TTCACCTGCA CCTGCACACC GAATTCTCGC TTATCGATGG CACCTTGCGC
ATCAAACCGA TGCTGGCCGC TGCCAAAGAG CGTGGTTTGC CTGCACTCGC GTTGACCGAT
CAGGCCAATC TGTTTGCGAT GGTCAAGTTT TATGAGGCGG CACGCAAAAG TGGCATCAAG
CCGATTCTTG GGGCGGATTG TTTGGTTGTG GACGAACCGG GCAGTACCCC TTATCGCGTC
GTGCTTCTGG CGCAGAATAA CCTGGGATTC CGGCATCTGA CCGAGCTGCT TTCTCGTGGC
TATTGCGAAG GGCAAATTCA GGATCGCCCC ATGTTGCGGC GCGAATGGCT GACACAGGAA
CAGTGCGCGG GGCTGATCGC TTTAAGTGGC GGGCATCTGG GCGAAATCGG TCAGCTATTG
CTGCATGGCA AGGCGCGTGA GCGCAAGGCG GCGATTAAAT TCTGGACTGA GCGATTTCCT
GATCGCTTCT ATCTTGAACT GACCCGTTGC GGTCGCCCGG ACGAAGAAAA ATACCTGCAC
GCTGCCGTCG AGTTGGCCGA ACAAGCGCAG TTACCTGTTG TGGCCACCAA CGACGTGCGT
TTTTTAGATC AGGAAAACTT CGAGGCGCAT GAAGTGCGGG TCTGTATTCA GCAGGGGCGC
GTCCTAGATG ATCCGCGTCG CCCGCACGAT TACACCGCGC TTCAATACTT ACGCCCCGCC
GATGAGATGC AGGCGCTCTT TGCCGACATT CCCGAAGCGA TTGAGAACAG CCTGGCGGTC
GCAGAGCGCT GCAATGTGAC GTTGCAGCTC GGCAAGAATT TTTTGCCCAA CTTCCCGACG
CCCAATGGCG AAACGGAAGC CGATTATCTG CGCACACTGA GCGAGCAGGG CTTGGCTCAT
CGGTTCGAAC GTGTGCCCGC CGAACAGCAT GAAGCGTATC GGGAACGGCT CAATATCGAG
CTGGACGTGA TTATCCAGAT GGGCTTTTCG GGCTATTTTT TGATCGTGGC CGACTTCATC
CAGTGGGCAA AGCGACAGGG CATTCCCGTG GGGCCGGGTC GCGGTTCTGG TGCGGGTTCG
CTGGTGGCCT GGGCGCTGCT GATTACCGAT ATCGACCCGA TTCCCTACGA TCTGCTGTTC
GAACGGTTTT TGAACCCCGA GCGGGTCTCG ATGCCCGATT TTGATATCGA CTTTTGCATG
GAAGGCCGTG ACCGGGTGAT CGATTACGTG GCCGAACGCT ATGGCCGTGC AGCGGTATCG
CAAATCGCCA CGCACGGCAC CATGGCGGCC AAAGCGGTGG TGCGGGATGT CGGGCGGGTC
ATGAGTTATC CCTACGGTTT TGTCGATCGG ATTGCCAAAC TCATTCCGAT GAAGCCGGGG
CTGGATGTGA CGCTCGAAGA CGCATTGGGT CGCACCGAGC GTTCGCAGAA AGAACAGGAA
CGGTTTTCGC AGGAATTCCG TGATCTTTAT GAGCGTGACG AAGAAGTCCG TGCCATCGTC
GATATGGGTA TGGCGCTGGA GGGCTTGTCT CGAAACGTCG GCAAGCATGC CGGTGGCGTG
GTCATCGCGC CGAGCAAGCT GACCGACTTC ACGCCGATGT ATTGCGAATC GAACGGTGCT
TCGGCTGCCT CCCAGCTCGA TAAAGATGAC GTCGAAGCCG TAGGCCTCGT CAAGTTCGAC
TTTCTGGGGC TGCGCAATCT CACCATCATC GACTGGGCTT TGGGCTCAAT CAATGCCACG
CGCCAGAAAG TCGGCAAGGA ACCGGTCGAT ATCACGGTCA TCCCACTGGA TGACAAGCCC
AGCTTCAACC TACTCAAGCG CTGCGAAACC ACCGCGGTAT TCCAGCTTGA ATCGCGCGGC
ATGAAGGATC TGATTCGCCG ACTGCAACCG GATACCTTCG AAGACATCAT CGCCTTGGTA
GCACTGTTCC GACCGGGCCC ATTGCAATCG GGCATGGTGG ACGATTTCAT CCTGCGCAAA
AAAGGCGAGC AGAAGATCGA GTACCTGCAT CCCTGGCTCA CCGATGTGCT CAAGCCGACC
TACGGCGTCA TTGTCTACCA AGAACAGGTG ATGCAGATCG CGCAGATTCT GGCGGGCTAC
ACGCTCGGCG GTGCGGATTT GCTGCGGCGA GCGATGGGCA AGAAAAAACC CGAGGAGATG
GCCAAGCAGC GGGAAATTTT CCTTGAAGGC GCCAAATCCA AGCAAGTGGA TCCGACTCAG
GCCGGTTACA TCTTCGATTT GATGGAAAAG TTCGCCGGTT ATGGTTTTAA CAAATCGCAC
TCGGCGGCTT ACGCACTGGT GGCCTATCAA ACCGCTTGGC TCAAGGCGCA TTACCCGGCG
CACTTCATGG CCGCCGTGCT TTCGGCCGAT ATGGATAACA CCGATAAAAT CGTCGGCTTG
ATCGGCGAAT GCCAGCGCAT GGGGCTTAAC GTCATCCCGC CGGATGTAAA CCACTGCGCC
TACAAGTTCC AGGCACTGGA TGAACACACC GTGGTTTATG GTTTGGGCGC CATCAAGGGC
GTGGGCGAGG GCGTGATTCA GAAAATCGTC GAGGAGCGCC AAGCGGGTGC GCCGTTTGTC
GACATGAACG ACTTCTGTCA TCGCGTCGGC AGCCAGGCGT TGAACAAACG CGTGCTCGAA
GCGATGGTGC TGGCAGGCGC GCTGGATACC TTAGGGCCAA ACCGCGCGAG TTTGTTTGCT
CATATTCCCG ATGCCATGAA GGCGGCAAGC CAGATTCAGG CGGCAGAGGC CGCAGGCATG
GGCGATCTGT TCGGAGGCTT CGATGCGCCG GAAACGGCCA TTCGCGTGCC GATCCCAGCG
CTTGAGCCTT GGCCGGATGC CGAGCAGTTG CGCAAGGAAA AAGACACGTT GGGGCTGTAT
CTCACCGGCC ACCCGATTCA CGCATTCCGC GACGAACTCA AGAGCTTGGT TTCCGACACG
CTATCTGGCC TGCTCGACAA GCTGGATATC CCCGCGCCGG GCACCTTCCC TAAAGGCGTG
CCGGTCACGG TGGCAGGGTT GGCCATCGCC GAGCGCATCG TGCGCCAGCA AAACGGTGAT
CGGCAGTTGT TCCTGACGCT CGATGATGGC GAAGGCCGCT GCGAAGTGCG TATCACCGGC
GATGAAATCG ACCGGATCAG CGCGCAGGTT GAACGCGATC AACTGGTGAT CGTCGAAGGC
GATGCGGTAT TCGATAACTT CAGCGGCGGC ATACGCGTGC GCTGCAAACG TCTGCTTGTG
CTGGAACAGG CGCGACTGGA AAAAGCACGC GGGATTTTTC TAGAGTTCGC CGCAGACTGC
AATGCGGCAA AAGCGCAGGC ACTCATCGAA CGTATGCGCC CGATGCGCTG CGATGGCGTA
CCCTTGAGTT GCCGAGTCTA TTCGGACATG GCCAAAGCGG TCGTTCGTCT TGGCCCCGAA
TGGCAAATAG CGCCGACGGA TGACAACATG CAGGCCATCC GTTCCGCGCC CGGGGTGCAG
AGCGCGCGTG TTTTATATCA ACGTTAA
|
|---|
| Protein sequence | MSFVHLHLHT EFSLIDGTLR IKPMLAAAKE RGLPALALTD QANLFAMVKF YEAARKSGIK
PILGADCLVV DEPGSTPYRV VLLAQNNLGF RHLTELLSRG YCEGQIQDRP MLRREWLTQE
QCAGLIALSG GHLGEIGQLL LHGKARERKA AIKFWTERFP DRFYLELTRC GRPDEEKYLH
AAVELAEQAQ LPVVATNDVR FLDQENFEAH EVRVCIQQGR VLDDPRRPHD YTALQYLRPA
DEMQALFADI PEAIENSLAV AERCNVTLQL GKNFLPNFPT PNGETEADYL RTLSEQGLAH
RFERVPAEQH EAYRERLNIE LDVIIQMGFS GYFLIVADFI QWAKRQGIPV GPGRGSGAGS
LVAWALLITD IDPIPYDLLF ERFLNPERVS MPDFDIDFCM EGRDRVIDYV AERYGRAAVS
QIATHGTMAA KAVVRDVGRV MSYPYGFVDR IAKLIPMKPG LDVTLEDALG RTERSQKEQE
RFSQEFRDLY ERDEEVRAIV DMGMALEGLS RNVGKHAGGV VIAPSKLTDF TPMYCESNGA
SAASQLDKDD VEAVGLVKFD FLGLRNLTII DWALGSINAT RQKVGKEPVD ITVIPLDDKP
SFNLLKRCET TAVFQLESRG MKDLIRRLQP DTFEDIIALV ALFRPGPLQS GMVDDFILRK
KGEQKIEYLH PWLTDVLKPT YGVIVYQEQV MQIAQILAGY TLGGADLLRR AMGKKKPEEM
AKQREIFLEG AKSKQVDPTQ AGYIFDLMEK FAGYGFNKSH SAAYALVAYQ TAWLKAHYPA
HFMAAVLSAD MDNTDKIVGL IGECQRMGLN VIPPDVNHCA YKFQALDEHT VVYGLGAIKG
VGEGVIQKIV EERQAGAPFV DMNDFCHRVG SQALNKRVLE AMVLAGALDT LGPNRASLFA
HIPDAMKAAS QIQAAEAAGM GDLFGGFDAP ETAIRVPIPA LEPWPDAEQL RKEKDTLGLY
LTGHPIHAFR DELKSLVSDT LSGLLDKLDI PAPGTFPKGV PVTVAGLAIA ERIVRQQNGD
RQLFLTLDDG EGRCEVRITG DEIDRISAQV ERDQLVIVEG DAVFDNFSGG IRVRCKRLLV
LEQARLEKAR GIFLEFAADC NAAKAQALIE RMRPMRCDGV PLSCRVYSDM AKAVVRLGPE
WQIAPTDDNM QAIRSAPGVQ SARVLYQR
|
|---|
| |