Gene Hneap_0461 details

Gene Information

• Locus tag: Hneap_0461
• ID: 8533585
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halothiobacillus neapolitanus c2
• Kingdom: Bacteria
• Replicon accession: NC_013422
• Strand: -
• Start bp: 485265
• End bp: 487091
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 646382841
• Product: RNA polymerase, sigma 70 subunit, RpoD
• Protein accession: YP_003262364
• Protein GI: 261855081
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTACGAAG ACCAGCAGGC CAGCATCAAA TCACTCATCG CTCGCGGCCG GGAACAGGGC 
TACCTGACCT ACGCGGAAAT CAGCGACCAT TTGCCCGAAG CCCTTGTCGA TGCCGACCAG 
ATCGAAGACA TCATTGGCAT GATTCAGGAA ATGGGCATTT CCGTTTCCGA AGTCGCACCC 
GATGGCGATG ACCTCGGCCT CGCCGACGAA TCCCGCGCTG CCAGTGACGA AGATGCCACC 
GAAGAAGCAG TTGCCGTCCT TGCCTCGCAA GTCGATGCCG AATTCGGCCG CACCACTGAT 
CCCGTGCGTA TGTACATGCG CGAGATGGGT ACGGTCGATC TGCTCAATCG CCAGGGCGAA 
ATTGAAATCG CCAAACGCAT AGAAGAAGGC CTGATCGACG TCACGCGTGC GCTGGCCTTT 
TATCCACCGA CCATCGAAAC CCTGCTAGAG CACTACGCCC GGATCGAAGC CGGCGACTTG 
CGGATGCAGG ATGTCATCGT CGGCATTATC GAACCTGAAG TTGAAATCCC CGAAGATGCC 
GAAGAAAAAC CGTTGGACGT CGCCGAAGGG AAAGCAAGCA ACACAGACGA CGAGGACGAG 
GATGAAGAAG ACGATACCGA AGAAGAAGCG GTCGTCGACA ACACGCTCGA CCCTGAGCTT 
GTCCGAACCC ACTTGATGGA AATCAAGCGC TTGGCCGAAA ATCTCGACGA GCGCTCACCG 
GAATACCTTG CCAGCTTGGC CGACCAATTG GTTCAGCTCA AACTCAACCC GGCATTCAAT 
GAAAAGCTGC TTGAACAGAT TCGTCAGGCC ATTGCTCGGA TTCGACTGCT CGAAAAGCAG 
ATCATGCATC AAGCCGTGGA CAAAGGCGGC CTCAAGCGCG AAACGTTCAT TGAAGCATTC 
CGCAGCAACG AATCGGATAT CGGCTGGGTT AAAGTGGCCA CAAAGGGCAA GCCCACTGCG 
AAATTCAGCC AAGTACAGCC GGAAATCGAA CGTCTGCAAA AACGCCTGAA CACCGTCGCC 
CGCGACAGCA AATTGACTGT GGCGCAAACG CGTGAAGTCC ATCGTCTTAT CACCTTGGGC 
GAAGCCAAGG CGCGGCGCGC GAAGAAGGAA ATGATCGAAG CCAACCTGCG GCTCGTGATT 
TCCATCGCCA AAAAATACAC CAACCGTGGC CTGCAATTTC TGGATTTGAT TCAGGAAGGC 
AACATCGGTC TGATGAAAGC GGTCGACAAA TTCGAATACC GCCGCGGCTA CAAGTTCTCG 
ACCTACGCCA CGTGGTGGAT TCGCCAGGCC ATTACCCGTT CGATTGCCGA CCAAGCGCGC 
ACCATCCGTA TTCCGGTGCA CATGATCGAA ACCATCAACA AGCTGAACCG TATTAGCCGT 
CAGATGTTGC AGGAAATGGG ACGGGAAGCC ACGCCGGAAG AACTGGCCGA GCGGATGGAC 
CTGCCGGAAG ACAAGATCCG CAAGGTGCTC AAAATCGCCA AGGAACCGAT TTCCATGGAA 
ACGCCGATCG GCGAAGATGA CGATTCCAAC CTGGGGGATT TCATCGAAGA TCAGAGCGCG 
ATTTCCCCGA TGGACTCGGC AACAAACGCT AGCCTGTCCG AGATTGTGCG TGAGATTCTG 
GCATCCCTTA CCCCGCGTGA GGCAAAGGTC TTGATGATGC GTTTCGGTAT CGGTATGAAC 
ACCGACCACA CGCTGGAAGA AGTCGGCAAG CAATTCGATG TCACCCGTGA ACGCATCCGC 
CAAATAGAGG CCAAGGCACT GCGCAAACTG CGTCACCCGT CACGTTCCGA GCGGCTGCGT 
AGCTTCATCG AAATGAATAT CGACTGA 

 

Protein sequence

MYEDQQASIK SLIARGREQG YLTYAEISDH LPEALVDADQ IEDIIGMIQE MGISVSEVAP 
DGDDLGLADE SRAASDEDAT EEAVAVLASQ VDAEFGRTTD PVRMYMREMG TVDLLNRQGE 
IEIAKRIEEG LIDVTRALAF YPPTIETLLE HYARIEAGDL RMQDVIVGII EPEVEIPEDA 
EEKPLDVAEG KASNTDDEDE DEEDDTEEEA VVDNTLDPEL VRTHLMEIKR LAENLDERSP 
EYLASLADQL VQLKLNPAFN EKLLEQIRQA IARIRLLEKQ IMHQAVDKGG LKRETFIEAF 
RSNESDIGWV KVATKGKPTA KFSQVQPEIE RLQKRLNTVA RDSKLTVAQT REVHRLITLG 
EAKARRAKKE MIEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK FEYRRGYKFS 
TYATWWIRQA ITRSIADQAR TIRIPVHMIE TINKLNRISR QMLQEMGREA TPEELAERMD 
LPEDKIRKVL KIAKEPISME TPIGEDDDSN LGDFIEDQSA ISPMDSATNA SLSEIVREIL 
ASLTPREAKV LMMRFGIGMN TDHTLEEVGK QFDVTRERIR QIEAKALRKL RHPSRSERLR 
SFIEMNID