| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0141 |
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| Symbol | |
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| ID | 8533255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 136074 |
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| End bp | 138251 |
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| Gene Length | 2178 bp |
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| Protein Length | 725 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 646382519 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_003262052 |
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| Protein GI | 261854769 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAATA CCGCTCGCCG CATACGCGGT CAGGCATCCT CTCTGGTTAT CTTTATGGCG
CTGACACTGG TCACCGCCGA AGTCCTGATC AACAGCCCGG TCCGGGCTGC TGATGCACCA
CCACCGGGTA TATCGCGTGT TCAGGGCGAC AACTCCGATA CGGATAAAGT TACCCTGAAT
TTCCGTGACA TGGATATCGG TGCGCTCATC GAGGCCGTCT CGAAAGTCAC GGGCAAGAAT
TTCATCGTCG ACCCCCGGGT CAAGGCGCGG GTCACGGTCA TTTCTGCCAA GCCGATGAGC
CCGCAAAAAC TCTACGACGT GTTTCTTTCG ATCTTGCAGG TCAATGGCTT TGCTGCGGTA
CCTGCCGGTG CGGTGATCAA GATCGTTCCG GAAATCAACG CGCGCTCCGA CGCCCAGCCG
GTCAATCCCG GTTCGTCGGC GGTCGGGGAT CAAATGGTGA CCGAGGTCGT TCACCTGCGC
TATGTACCTG CGGCGCCTTT GCTGACCGTG TTGCGTCAAA TCATGCCGCA ACAGGCCGCG
CTTTCCGTGT ACCCCGATTC CAATTCACTC GTGATTACCG ACCGGGCGGG CAATATCGAC
CGGCTCAAGA AAATATTGGC CAAGGTGGAT CAACCTGCCG TGGGAGATGT GGAGATCATC
CGGCTCAAAC GGGCATCGGC TGACTCGGTC GTGTCCACGC TCAAGGCGTT GTTTGGTGCC
AGCGGTGGCG GCGGCGCCAA GGGCGCACCC GTGCCGGGTG GCGGTGCAGG AGGCAATTTT
TCCAGCGTGC CTGCGTTCGC CGCCGATGAC CGCACCAACA GCGTTTTACT GAGTGGCGAT
GCCGTCTCTC GCGCCAAGAT GCGCGCCATC ATCCTGAATC TGGACATGCC GCAGACGAAT
TATGGCAATA CGCGCGTGTT CCGACTCAAA TACGCCAATG CCGAAGATCT TGTCGATGTG
CTCAAAGGGA TCGTGAGCAC CAACGGCGCC ACATCCACCG GGGCGACGGC CACGAAAGAG
GCGACCACCA ATCCGGACAA CAACCAGCTT GAGATCGCCG CCGACAAATC CCTTAACGCC
CTGGTCGTGA CGGCATCGCC CAGCCGGATG CAGACGGTCG AGTCGGTGAT CGATCAGCTC
GATATCCGGC GCAAGCAGGT ATTGGTGGAA GCGATTATTG CTGAGGTGTC GAACGGCGTA
ACCAAAAAGT TGGGCACCCA GTTTCTGGTC GGTGGCGGCA GCGGTACGGT GCCTATCGGT
ATTTCCACCT TCAACGGGTT GTTGTCCAGC GTCGCCAGCT CCGCAGCGCA GGCGGGCACA
GGCAGTGTCG GTAGCGCCAT TGGTTTGGGT TTGGCCGGGG CGTTGGGCGA TGGCGGCAAT
ATCGGCGTGG GGCGGTACGG TCAAGGCGGC GCCGATTTTG CACTGCTGGT TTCCGCGCTG
GCGGGGAACT CGGGTAATAA CATTCTCTCC ACGCCGAGTC TGCTGACACT GGATAACCAG
GAAGCGAGCA TCGTGGTCGG CCAAAATATT CCAATCGTCA CCGGCTCGTA TGCACAGACC
GGTTCGGCTA CCTCACCCAC CAATCCGTTC CAGACCATCA CGCGCGAGGA CATCGGCGTC
AAACTCAAGG TCACGCCCAC CATCAGTCCG GATGGTACCG TGCGTTTGAA GATCGAGCAG
GAAGTGTCCA GCCTCGACAG CGCAGCGCAA AGCTCGGCGG GCCTGATCAC CAATAAACGT
AACGTGACCA CCACAGTGCA GGTCGATGAT GGCGACGTGG TAGTGTTGGG TGGTCTGATC
GACGACAGCA CCAATTCCAA TCAACAAAGT GTTCCGGGCT TGGGCGACAT TCCCATTCTG
GGTAATTTGT TCCGCTACCG TTCGGCCAGT ACCAATAAGC GTAACTTGAT GATTTTCATT
CGGCCGTTGA TCGTTGGTGA TGGCGGCAAG TTGTCCGAAT TCAGCCGTGA ACAGTACAAC
CGCATCCGTC AGAGTCAACA GGATACGTTC GACAAGCGTT CTCTGGTTAA CCCAAGCGAT
TGGTCCGTTT TATCGCCAGA ACAGAATTTC CAACGTAATC TGCCGATCCC GATGCCGCAG
AATATCCAGA CATTGATGGA TCAGGATCGG GCTCGCAGCC AAACGGCCAG CGGTCAGACC
GCGGCCCCCA GACCGTGA
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| Protein sequence | MMNTARRIRG QASSLVIFMA LTLVTAEVLI NSPVRAADAP PPGISRVQGD NSDTDKVTLN
FRDMDIGALI EAVSKVTGKN FIVDPRVKAR VTVISAKPMS PQKLYDVFLS ILQVNGFAAV
PAGAVIKIVP EINARSDAQP VNPGSSAVGD QMVTEVVHLR YVPAAPLLTV LRQIMPQQAA
LSVYPDSNSL VITDRAGNID RLKKILAKVD QPAVGDVEII RLKRASADSV VSTLKALFGA
SGGGGAKGAP VPGGGAGGNF SSVPAFAADD RTNSVLLSGD AVSRAKMRAI ILNLDMPQTN
YGNTRVFRLK YANAEDLVDV LKGIVSTNGA TSTGATATKE ATTNPDNNQL EIAADKSLNA
LVVTASPSRM QTVESVIDQL DIRRKQVLVE AIIAEVSNGV TKKLGTQFLV GGGSGTVPIG
ISTFNGLLSS VASSAAQAGT GSVGSAIGLG LAGALGDGGN IGVGRYGQGG ADFALLVSAL
AGNSGNNILS TPSLLTLDNQ EASIVVGQNI PIVTGSYAQT GSATSPTNPF QTITREDIGV
KLKVTPTISP DGTVRLKIEQ EVSSLDSAAQ SSAGLITNKR NVTTTVQVDD GDVVVLGGLI
DDSTNSNQQS VPGLGDIPIL GNLFRYRSAS TNKRNLMIFI RPLIVGDGGK LSEFSREQYN
RIRQSQQDTF DKRSLVNPSD WSVLSPEQNF QRNLPIPMPQ NIQTLMDQDR ARSQTASGQT
AAPRP
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