Gene Hneap_0132 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHneap_0132 
Symbol 
ID8533246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHalothiobacillus neapolitanus c2 
KingdomBacteria 
Replicon accessionNC_013422 
Strand
Start bp123488 
End bp126406 
Gene Length2919 bp 
Protein Length972 aa 
Translation table11 
GC content57% 
IMG OID646382510 
Productouter membrane autotransporter barrel domain protein 
Protein accessionYP_003262043 
Protein GI261854760 
COG category[S] Function unknown 
COG ID[COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain 
TIGRFAM ID[TIGR02601] autotransporter-associated beta strand repeat
[TIGR01414] outer membrane autotransporter barrel domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTATGG ACACACGGGC GCAAACCAAA AAAGCACCAT GGTCTTCTTG CCGTTTCCAG 
CGGTTCTGGT TGTGGGTGAC AACAAGCGCG CTGGCGTTGG TGATTGCCCA GCTGGCTCAG
GCGGATGAAT GGACGGGCGT CACCGACGAT GACTGGTTCA ACAGTGCCAA TTGGAGTTTT
TTTGTAGTGC CCACGTCGAG TTCACCAAGA TTGGTCATTA TTGACGCTGG TTCTTCGAAC
CCAGCGCGGA TTGGCGGTGC CGGTATCGAC AATGCCGAGG CGACGACAAT GGATATTGGC
GTCAACCGGA ATGGGGTATT AGAAATAGAA GGCGGTAGTC GCAGGCTTTT TAGTGGCGAT
GCAACCTTGG GTCGTTTCTG GGGTTCTCGA GGTGTGGTCG GCGTCAATGG CCCAGATGCG
CAATGGGGCA TTCTTGGGAA CCTCGTCATC GGCAACGAAG GCTCCGGGCA GATCACTCTG
GAAAATGGCG CCACGCTTGG GGTGAGCGGG AATGTCGACT TTGCTCGTTT TCGTCTTGCA
GGGTTCGGTC AAGCTTCTGA GGGTGCGTTG ATCATCAATG GCGGCAGCTT TGTTCAAGAT
CCCGATACGG GCACTTTCGG TATCGGTATT TCCGGCGATG CCACGCTGGA GATCAGTAAT
GGCGGTCAAC TGGTGAGTGG ATATACCACT CTGGGGCTCA ATGCCGACGG CACGGCAGAA
GCATCCATCT ACAGCAATGA CGCAACCCGC TTATCCCGTT GGCAGGCGAA CAACCTGCGT
ATAGGCGGTG CCGGGCAAGC CGGGTTGGCT ATAGGCCAGG GGGCGGTTGT TCACGTGGCC
GGTGATGCTT TGATCGGAGA TGAAGCCGGT TCACGAGGTA CGGTGCTCGT TTTTCGCGAG
GCATCAAGCG CAGTGGATGC CGGCATTTTG AACATCGGCG GGGCACTGGC GGTAGGCGAG
GGCGGCCACG CCTCATTGTT GATCGGCAAT GGCGGTAAGG TCGATGTGGC GGGTGTGGTT
GTCATCGCCG ATAATGCAAG CGCCTCGGGC AATCTTGTCG TTGGCTCAGC CGGGGAACTC
AATACGCATC ATGATGGTAT TTACGTTGGT GCATTAGGCG AGGGCGAACT CACGCTGAGC
GAGGGTGGCC GCGCGCTGCT CCATGGCGGC GCTGTCACGC TCGGCTTTTT TGCAGGGTCG
TCAGGCACGC TCAATATTGG TGCGGCCGAC GGCAGTGATG CCCGAGCGCC CGGTGTCTTG
GATGCTTCGA ACGTCCGCTT TGGCGCTGGG GCGGGAACGC TCGTCTTCAA TCACACAGGA
CATGATTATG TGTTCTCCAG TGATATTTCC GGCAATGGCC TCATCAAGCA TCGTGCTGGA
GGGACGACGC TGACCGGCGA TGGCAGTGCC TTTACCGGAG GTGTGTTTCT CGAAGGCGGT
CGACTGAGCG TTAATGGCCT TTTGGGCGGG GGGATTGATG TCGCGGGCGG GACGTTGGCT
GGCACAGGAC AAGTGGGTGC TGTGATCTTG CGCCGCGGTA GCCAAATCGC ACCGGGTAAT
TCCATCGGCA CACTGAAGGT AGCAGGCGAC ATCACTATCG CCCTCGGATC AGATTATGAG
GCAGAGGTCA ATGCAGCCGG TGCAAGCGAT CTCATTCACG CCACCGGAAC GGCCACCATC
AATGGTGGCT CGATCAATGT CCTTCCCTCC CCGGATTTCG CGGTCGGAAC ACCTTATACC
CTGCTCACTG CCGATGGCGG ACTGGTCGGT GCGGGATTCG ATGCGGTTAA CTTCGATTCC
CTGTTTGTCT CACCGGTTCT TTCGGACGAC GCCAATCATG TTTTTTTGAC GATTACCCAG
ACAACCGATT TTGTAGCGGT CGCACGCACG TCCAATCAGG TGGCAGCGGC AGGCGGTATC
CAGTCAGTCG CTAGCGGACT TTTGTTTGGC GCCATTGCCT CGCTTGGTGA TGCTGACGAA
GCGCGCAGGG CTTTCGATGA TATTTCAGGC GAGGTTCACG CCTCGATCAA GACGGCATTG
ATCGAGGATA CCCGCTTTGT TCGCTCGGCG ACGTTGTCAC GCCAGATCGG CGAGGGGGAA
GATAGCGGTC TGTGGACCAA GAGTTTCGGC TCATGGGGGC GCTGGGATAG CGATGGCAAT
GCGGGCGAGC TCTCGCGTCA CCTCGGTGGG TTACTGTTTG GCCGGGATAG CCTCGTGCTG
GAGGATATCC AGTTAGGCTG GGTGGCCGGT TATGCCCGCT CGTCGCTCCA TATCGATGAG
CGCGCGTCAA CTTCAACTGC TGACAGTTAC ACCCTTGGCG CCTATGTGGG GCGTCGATGG
GATGCGTTTT CACTCAAGGG TGGGGTGGCT CATAGCTGGC ATCGACTCGA TACCGCACGC
ACGGTGGCTT TCAGCGGTTT TACCGACAAT CTGTCGGCGA ATTATAGTGC CCGTGCATTT
CAGACCTATG GTGAGGCAGC CTACAGTTTG GATATCGAGG GTGCGCGCAT CGAGCCTTTT
ACCAACCTGA CGTATGTCCA TCTGAGTACG GACGTTTACA GTGAAACCGG AGGTGCGGCG
GCATTGACAG CGGCAAGTCA AAGTATCGCA GAGACATTCA CAACCATCGG ATTGCGTGGG
AAATCACAGT TCGATTTCGG CGGGGCACCG ACCCATATCA GTGGCTCGGC CGGCTGGCGA
CATGCCTTCG GAAATACACC AACCGCCACC CATCATTTTT CAGGCGCAGA CAACTTCACC
GTAACCGGCG TACCCATCGC AGTGGATGCA CTTGCACTCG ACCTCGGGGT GAGCGTGAAC
CTCACTCAAG ATGCCACGAT TGGGCTTTCT TATCATGGTC AGTTTGGGTC CAGCTTGATC
GATCAGGGGC TCAGAGCCTC TCTCAATGTT GCGTTTTGA
 
Protein sequence
MFMDTRAQTK KAPWSSCRFQ RFWLWVTTSA LALVIAQLAQ ADEWTGVTDD DWFNSANWSF 
FVVPTSSSPR LVIIDAGSSN PARIGGAGID NAEATTMDIG VNRNGVLEIE GGSRRLFSGD
ATLGRFWGSR GVVGVNGPDA QWGILGNLVI GNEGSGQITL ENGATLGVSG NVDFARFRLA
GFGQASEGAL IINGGSFVQD PDTGTFGIGI SGDATLEISN GGQLVSGYTT LGLNADGTAE
ASIYSNDATR LSRWQANNLR IGGAGQAGLA IGQGAVVHVA GDALIGDEAG SRGTVLVFRE
ASSAVDAGIL NIGGALAVGE GGHASLLIGN GGKVDVAGVV VIADNASASG NLVVGSAGEL
NTHHDGIYVG ALGEGELTLS EGGRALLHGG AVTLGFFAGS SGTLNIGAAD GSDARAPGVL
DASNVRFGAG AGTLVFNHTG HDYVFSSDIS GNGLIKHRAG GTTLTGDGSA FTGGVFLEGG
RLSVNGLLGG GIDVAGGTLA GTGQVGAVIL RRGSQIAPGN SIGTLKVAGD ITIALGSDYE
AEVNAAGASD LIHATGTATI NGGSINVLPS PDFAVGTPYT LLTADGGLVG AGFDAVNFDS
LFVSPVLSDD ANHVFLTITQ TTDFVAVART SNQVAAAGGI QSVASGLLFG AIASLGDADE
ARRAFDDISG EVHASIKTAL IEDTRFVRSA TLSRQIGEGE DSGLWTKSFG SWGRWDSDGN
AGELSRHLGG LLFGRDSLVL EDIQLGWVAG YARSSLHIDE RASTSTADSY TLGAYVGRRW
DAFSLKGGVA HSWHRLDTAR TVAFSGFTDN LSANYSARAF QTYGEAAYSL DIEGARIEPF
TNLTYVHLST DVYSETGGAA ALTAASQSIA ETFTTIGLRG KSQFDFGGAP THISGSAGWR
HAFGNTPTAT HHFSGADNFT VTGVPIAVDA LALDLGVSVN LTQDATIGLS YHGQFGSSLI
DQGLRASLNV AF