| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0030 |
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| Symbol | |
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| ID | 8533143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 35755 |
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| End bp | 38121 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 646382409 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003261943 |
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| Protein GI | 261854660 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGAAG ATCGAGTTGG CCTCACCTCT TTGCCGCAAC GTCCATGCGA TTATGCCGAG
GCATGGTTGT GGGTGGATGT GAACGGGCAG GGTGCGCTCA CGGCGACGCA GGCGATTACG
TCGCTGGACG CCATTGCGCC TATCGATCAA ATTCTGGAAA CCTTGCCGCA GAGCGATGCA
TGGCACCAGC ACATGGGCCA AATCGGCCCC ATGGAAAATA TCCGTGACTG GATTTGGCAA
GCACGCTGGT TAAGCGCCGA CCGGCTCGAT GGTTCCCACT CTCCCCTTGA TGATGCAAAC
CTTACGAACA TCGGTGGGCG GCGTTTGCTG CATGTTTCGC TTTACCCGCG CCTACCCGAC
GATGCCATCG GGTGGCTCGA CAGCCTCCCG GATTGTGTGA TCGGCCGCGA TGCGAATCAG
GCGGTCGTGT ACCGCAACAG GGCGGCACAG ACGTTTAACA ACCCTTCATT GCTCGATCAA
CTCAGTCGGG GCGTGCCAGC CCAGTGTGCC GAAGGCGTGA TCGAGGACCA GGTGTCGGTC
GATGATCATG GCCGCCTGCG ACACTTCCAG CGGCTGTTGA TCGCTGCGCC GTCTCCCGCT
TCGAGTGTCA AAGACTTTCT GGAGCTCTAT GAATTGACCA CGCCCAAGTC CCTGGGCAAG
GCGGAGGGTG ATTATGGCCA GCTGATCGAG TTGTTGGTTG AGGCGACCCA CGATCTGATC
GTGATCAAAG ACCCCGAAGG CCGCTGGTTG TTCGCCAATT TGTCCATTGT CCACAGTCTT
GGACTGGCGC ATGTCGTCTG GCTCGGCAAA ACCGACCGGG AGCTGGTCGA TCTGGCCTCG
CCCACCGTCC GGGGCGCGCT GCAGTTTTGT CATGAAACAG ACAAGGCTGC CTGGAACCAA
GGCCAGCAAA TCAGGCACCT GGAGACTATT CCCTGCGAGG ACGGGCACAG CTTGATCGTC
GATGTGATCA AGCAACCCGT CTTCGATGAT AAGGGCAAAC CCCGCGCCAT CATCGTGGTT
GGCCGCGACG TGACGGAGCT GCACACCACG CAGGAGCAGT TCCAGATACT GGCCAGTCAG
GATGAGTTGA CCGGGCTGCT CAACCGCCGA TTCTTTCAGG TCGAGGCGCA GCGCTGGATC
GACATGTTGA GCGACGATGG CTCGAAACAC CTGGCTTTGC TGGTGTTCGA CCTGGATTAC
TTCCGTTCGA TCAACGACAG CTATGGCCAT GAACGTGGCG ATCAGCTATT GCAAGAAATG
GCGCGCCGAT TGCAAAACGA ATGTGTCGCC AGTCCGTTGC TTATTGCCAG AATGGGCGGC
GATGAGTTCG CCATTCTGGT GGAAACGGAC AACAAGCCAG AATCACTGAG TGCGCTGGGT
GAGCAGGTAA AGTCACTGAC TGCGCGTCCG TTCCAGATCG AGCACTTGAC CCTCTTCACC
TCGGCGAGCA CAGGGATTGT GATCTGGCCG GAGCACGGTC GATCCATCGG GGAATTGCTG
CATCAAGCCG ATTCGGCGAT GTATGCCGCC AAGGAACAGG GTCGTAATGG TCATGCGGTG
TTCTCTCCGG AAATCATGGA ACATCAGAAT CGGCAATCGG CGTTGCTGAC TGCATTGCGC
CAGAGTCAGG GAGATGAGCG CTTCTTCCTC GTCTATCAGG TACAGCAAAA TGCAAGCAGC
CTCGCCATCA CCGGGGTTGA GGCCTTGCTT CGTTGGCAGG CACCCTCGCC GGAACTGGCA
GCCGGCCCGG ATCAATTCAT CCCTTTGCTT GAAAAATCAG GGTTGATTAT CGACGTGGGC
GGCTGGGTGC TCGATGAAGC CTGCCAACAA ATCGCCCGCT GGCGGGAATA TATCGGCGAA
CGGATTACCG TGGCGGTGAA CGTATCGAGC ATCCAGCTGC ATTCGCCTTG CTTCATCGGG
CGGGTCCAGG CGGCGCTCAA AAAATCCGGA ATCAATCCAT CCCTGCTGGA GCTGGAGTTG
ACGGAGACTG CACTCGTCAA CGACCCCGCC AAGGCAGCGA GCACGCTCAT CGAACTGAAA
AAGCTGGGTG TTCAACTGGC ATTGGATGAC TTCGGCACAG GCTACTCTTC CTTGAGCTAC
CTGACGCAGT TCGAATTCAA CCGGCTCAAG ATCGATCAAA GCTTTGTGCG CGATATTCTC
GTTGACCCGA AGGATCTGGT GATCGTCAAG GCGATCGTGG CCATGGGCCA TGCCTTGGGG
CTCGAAGTGG TTGCAGAAGG CGTGGAAACC GTTGCGGAAC GCGACCTGCT CGATTCCCTT
GGGTGCGATT CCTTTCAGGG ATACCTTGTT GGTCGGCCCG GCAAGCCCGA AGAAATTTCC
CCCATGTTGG GCGTCGGATT GTTATGA
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| Protein sequence | MNEDRVGLTS LPQRPCDYAE AWLWVDVNGQ GALTATQAIT SLDAIAPIDQ ILETLPQSDA
WHQHMGQIGP MENIRDWIWQ ARWLSADRLD GSHSPLDDAN LTNIGGRRLL HVSLYPRLPD
DAIGWLDSLP DCVIGRDANQ AVVYRNRAAQ TFNNPSLLDQ LSRGVPAQCA EGVIEDQVSV
DDHGRLRHFQ RLLIAAPSPA SSVKDFLELY ELTTPKSLGK AEGDYGQLIE LLVEATHDLI
VIKDPEGRWL FANLSIVHSL GLAHVVWLGK TDRELVDLAS PTVRGALQFC HETDKAAWNQ
GQQIRHLETI PCEDGHSLIV DVIKQPVFDD KGKPRAIIVV GRDVTELHTT QEQFQILASQ
DELTGLLNRR FFQVEAQRWI DMLSDDGSKH LALLVFDLDY FRSINDSYGH ERGDQLLQEM
ARRLQNECVA SPLLIARMGG DEFAILVETD NKPESLSALG EQVKSLTARP FQIEHLTLFT
SASTGIVIWP EHGRSIGELL HQADSAMYAA KEQGRNGHAV FSPEIMEHQN RQSALLTALR
QSQGDERFFL VYQVQQNASS LAITGVEALL RWQAPSPELA AGPDQFIPLL EKSGLIIDVG
GWVLDEACQQ IARWREYIGE RITVAVNVSS IQLHSPCFIG RVQAALKKSG INPSLLELEL
TETALVNDPA KAASTLIELK KLGVQLALDD FGTGYSSLSY LTQFEFNRLK IDQSFVRDIL
VDPKDLVIVK AIVAMGHALG LEVVAEGVET VAERDLLDSL GCDSFQGYLV GRPGKPEEIS
PMLGVGLL
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