Gene Hneap_0016 details

Gene Information

• Locus tag: Hneap_0016
• ID: 8533129
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halothiobacillus neapolitanus c2
• Kingdom: Bacteria
• Replicon accession: NC_013422
• Strand: +
• Start bp: 18315
• End bp: 18794
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 646382395
• Product: type IV pilus modification protein PilV
• Protein accession: YP_003261929
• Protein GI: 261854646
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4967] Tfp pilus assembly protein PilV
• TIGRFAM ID: [TIGR02523] type IV pilus modification protein PilV; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAACCTG TCAATAAACC TGTTTACGGC CCCAGCCAGC GTGGCGTGGG CTTAATTGAA 
GTGCTCATCG CCGTGCTGGT GCTGTCCATC GGCTTTTTAG GTATTGCGGC CCTGCAAGCC 
AAGTCGTTGT CTACCAACAA CAGCGCCATG GCGCGCAGCA TGGCGGTGGT GGCGAGCTAT 
TCGATTCTCG ATGCCATGCG GGCGGATCGA ACCAATGCCT TGACCGGTAA TTACAACCAA 
ACGGTAACGG CTAACGCCTG CACCGGCAAC GGCTCACTGG CGCAAACCCA ACTCAACACT 
TGGTGTAACG AACTGGCGCA AAACCTCGGC GCGCAAGCGG CCACCACCGG CACGGTCGAT 
TGCAAAAATA CAGGCGATTG CACCGTCACC GTCACTTTCG ATGAAAGCCG TGTGGGCACT 
AACACCGGCG GTACCAGCGG CACCGGCGTT ACCACCATCA CCACGAGGGC GATGTTATGA 

 

Protein sequence

MEPVNKPVYG PSQRGVGLIE VLIAVLVLSI GFLGIAALQA KSLSTNNSAM ARSMAVVASY 
SILDAMRADR TNALTGNYNQ TVTANACTGN GSLAQTQLNT WCNELAQNLG AQAATTGTVD 
CKNTGDCTVT VTFDESRVGT NTGGTSGTGV TTITTRAML