Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_4257 |
Symbol | |
ID | 8532700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | + |
Start bp | 4703358 |
End bp | 4705190 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_003261588 |
Protein GI | 261823482 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAACA GTACAGGATT GCAGTTCACT GTAAAGGTCG GCGCGTTGCC GGCCTCGACG TTTGCGGTGG TCGATTTTCA GCTCAGCGAG GCGCTTAACC GGCCTTTCAG CCTATCGCTG AGTCTGGCCA GCGCCCTGCC GGATGTGGAT TTTGGCGCGG TGCTGGACCA GCCGTGCGAG CTGATGATTT GGTATGAGGG TGAGCTAAAG CGTCGGGTCA GCGGGATTAT CAGTGGTTTC ACACAGGGCG ACACCGGTTT TCGCCGCACC CGCTATCAGG CGGAAGTGCG CCCGGCGCTG TGGCGGCTGG GCTTACGTAC CAACGCCCGC ATCTTTCAGG CGCAGAAGCC AGAGGCGATT ATCGGCACCC TGCTGGAAGA AGCCGGGATT ACCGACTACG CCTTCTCGTT ACGTCATGAC CATGCCCCGC GTGAATACTG CGTGCAGTAC CGGGAAAGTG ATTTGGCGTT TGTCACCCGA CTGGCCGCAG AGGAAGGCCT GTACTTCTTC CACGAATTTG AGGAAGGTAA ACACCGGGTG GTCTTTGCCG ACGATGCCGG CGCATTGGCC AAAGGCCCTG AGTTGTTCTT CAATTTGGCG ACACAGGGGC TGAGTGAGGG CGAATATGTC CGGCGTTTCC ACTATGCCGA GCGGGTGAGT ACGGCAGAAG TGGAATTGAA GGATTACAGT TTCAAAACAC CAGCTTACGG GCTGTCACAC AAGAAGATGA GCAGCGAACT GGCGCACCAA CGTGAAAGCT ATCAGCATTA CGACTATCCA GGGCGTTATA AACAAGATCC GAGCGGCAAA GCGTTCAGCA ACTACCAGTT GGATGCACTG CGTTCAGAGG CGGTGACAAG CCAAGGGGAA TCGAACTGCG CGGGGCTGAT GCCGGGCCGT CGCTTCACGT TAACCGAACA TCCGAATGCA ACTCTGAATG CAGTGTGGCA AACGGTGAGC GTGACGCATA TCGGGCAGCA GCCACAGGCG CTGGAAGAAG AAAGCGGCGG CGAGCCAACG ACCATGAGCA ACAGTTTTGA AGTTATCAGT GCAAAAAAAA ACTGGCGAGC CATCATGCCG TACAAACCCA TGGTGGATGG CCCACAGATT GCCACGGTGG TAGGGCCGAC TGGCGAAGAA ATCTACTGTG ACCAGTACGG CAGGATCAAA CTGCAATTCC CGTGGGACCG CTACGGCGCA AGTGATGACC AAAGCTCCTG CTGGGTGCGA GTGAGTCAGG GCTGGGCGGG CAGCCAGTAC GGCATGATAG CCATCCCGCG CATCGGCCAT GAAGTGATTG TCAGCTTCCT CGAAGGTGAC CCGGACCAGC CGATTGTCAC CGGCAGAACC TTTCATGTAA CTAACCGCCC TCCTTATGAG TTGCCCACCC ACAAGACGCG TACCGTTCTT CGTTCAAGAA CGCATAAAGG AAAAGGCTTT AACGAACTGA GCTTTGAAGA TCAGTCTGGA CAGGAAGAAG TATTTATCCA CGCCCAGAAA GACATGAACA CCGTGGTGCT CAATAACCGC AGCACAAAGG TGAACATCGA CCACAGTGAA AATGTGGGTC GTCATCAGAC AATCATGGTT GGCGAAAATC AGGGAACAGA AATCAGAGGC GCCCAGAAGA TCACGGTGGC AAAGGGCCGC AAGACCGAAA TCACCACGAC TGAAGAACTG ACCGTAACCG GAGATATTAC CGTGCTGTCA GCCAGCGGCA CGATCAAATT ATCTACCGCC GGTGGATATA TCTCTATTGA TAATGCTGGC GATATCAACA TTGTCGGCAA CCACCTGATG CTGAATGGCG TACGCATCGA TTTGAACCAG TAG
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Protein sequence | MANSTGLQFT VKVGALPAST FAVVDFQLSE ALNRPFSLSL SLASALPDVD FGAVLDQPCE LMIWYEGELK RRVSGIISGF TQGDTGFRRT RYQAEVRPAL WRLGLRTNAR IFQAQKPEAI IGTLLEEAGI TDYAFSLRHD HAPREYCVQY RESDLAFVTR LAAEEGLYFF HEFEEGKHRV VFADDAGALA KGPELFFNLA TQGLSEGEYV RRFHYAERVS TAEVELKDYS FKTPAYGLSH KKMSSELAHQ RESYQHYDYP GRYKQDPSGK AFSNYQLDAL RSEAVTSQGE SNCAGLMPGR RFTLTEHPNA TLNAVWQTVS VTHIGQQPQA LEEESGGEPT TMSNSFEVIS AKKNWRAIMP YKPMVDGPQI ATVVGPTGEE IYCDQYGRIK LQFPWDRYGA SDDQSSCWVR VSQGWAGSQY GMIAIPRIGH EVIVSFLEGD PDQPIVTGRT FHVTNRPPYE LPTHKTRTVL RSRTHKGKGF NELSFEDQSG QEEVFIHAQK DMNTVVLNNR STKVNIDHSE NVGRHQTIMV GENQGTEIRG AQKITVAKGR KTEITTTEEL TVTGDITVLS ASGTIKLSTA GGYISIDNAG DINIVGNHLM LNGVRIDLNQ
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