| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_4238 |
|---|
| Symbol | |
|---|
| ID | 8532681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 4683081 |
|---|
| End bp | 4684577 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | 3-octaprenyl-4-hydroxybenzoate decarboxylase |
|---|
| Protein accession | YP_003261569 |
|---|
| Protein GI | 261823463 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGCA TGAAATACCG TGACTTACGC GAATTCCTCT CACTGCTGGA AGAGAGAGGG
GAGTTGAAAC GCATTACCCA GCCCATCGAT CCCTACCTTG AAATGACGGA AATTGCCGAC
CGGACGCTGC GTGCGGAAGG TCCAGCCCTC CTGTTTGAGA ACCCCAAAGG CTATGACATG
CCGGTGCTGT GCAATTTATT TGGCACGCCG AAGCGTGTTG CATTGGGAAT GGGACAGGAA
GAGGTCAGCG CATTGCGAGA CGTTGGCAAG CTGCTGGCAT TTTTGAAAGA GCCAGAGCCG
CCTAAGGGGT TCCGCGATCT GGTCGATAAA ATGCCGAAAT TCCGTCAGGT ACTGAATATG
CCGACAAAAC GGCTGTCTTC TGCGCCGTGT CAGGAGCAGG TCTGGAAAGG CGATGATGTT
GATCTGCGAC GCATTCCAGT GATGCAGTGC TGGCCGGAAG ATGCCGCGCC GCTTATTACC
TGGGGACTCA CCGTGACGCG GGGGCCGCAT AAAGAACGGC AGAACCTGGG GATCTATCGC
CAGCAGGTGC TGGGTAAAAA CAAACTGATC ATGCGCTGGC TATCTCATCG CGGCGGCGCA
CTGGATTTTC AGGAGTGGTG TCAGGAAAAT CCGGGGCAGC GTTTTCCAGT TGCTGTCGCG
CTGGGGGCTG ACCCAGCGAC GATCCTCGGT GCGGTGACGC CTGTGCCTGA CACGTTGTCA
GAATATGCCT TTGCGGGCTT ATTACGTGGG CATAAGACTG AAGTGGTTAA ATGTCTGTCG
AGCAATTTGG AAGTCCCTGC CAGTGCGGAA ATTGTTCTGG AAGGCTATAT TGAGCCAGGA
GAAATGGCGG CAGAGGGGCC GTATGGCGAC CATACCGGCT ATTACAATGA AGTCGATCAC
TTTCCAGTCT TTACCGTTAC GCATATTACT CAACGCCAGA ATGCTATTTA TCACTCGACT
TACACAGGGC GGCCGCCGGA TGAGCCTGCG GTACTGGGCG TGGCGCTGAA TGAAGTTTTC
GTACCGATCC TGCAAAAGCA GTTTCCTGAG ATTGTCGACT TTTATTTGCC GCCGGAGGGT
TGCTCTTACC GTCTGGCGGT CGTTACCATG AAGAAACAGT ACGCGGGTCA TGCCAAACGC
GTCATGATGG GCGTCTGGTC TTTTTTACGC CAGTTCATGT ATACGAAATT TGTCATTGTC
TGCGATGATG ACGTTAACGC GCGTGATTGG AAAGACGTGA TATGGGCGAT TACCACACGT
ATGGATCCGG CTCGCGATAC GGTATTAGTG GAAAATACGC CGATAGACTA TCTTGATTTC
GCTTCGCCGG TTTCTGGTCT GGGCTCAAAA ATGGGTCTGG ACGCGACCAA TAAATGGCCT
GGCGAAACGC AGCGTGAATG GGGACACCCC ATCAAGAAAG ACCCGCAGAT TTGCGCCCGT
ATTGATGAAA TATGGGACGA ATTAGCCATT TTTAGTGACA GAGAGCCTCG GCGCTAA
|
|---|
| Protein sequence | MNSMKYRDLR EFLSLLEERG ELKRITQPID PYLEMTEIAD RTLRAEGPAL LFENPKGYDM
PVLCNLFGTP KRVALGMGQE EVSALRDVGK LLAFLKEPEP PKGFRDLVDK MPKFRQVLNM
PTKRLSSAPC QEQVWKGDDV DLRRIPVMQC WPEDAAPLIT WGLTVTRGPH KERQNLGIYR
QQVLGKNKLI MRWLSHRGGA LDFQEWCQEN PGQRFPVAVA LGADPATILG AVTPVPDTLS
EYAFAGLLRG HKTEVVKCLS SNLEVPASAE IVLEGYIEPG EMAAEGPYGD HTGYYNEVDH
FPVFTVTHIT QRQNAIYHST YTGRPPDEPA VLGVALNEVF VPILQKQFPE IVDFYLPPEG
CSYRLAVVTM KKQYAGHAKR VMMGVWSFLR QFMYTKFVIV CDDDVNARDW KDVIWAITTR
MDPARDTVLV ENTPIDYLDF ASPVSGLGSK MGLDATNKWP GETQREWGHP IKKDPQICAR
IDEIWDELAI FSDREPRR
|
|---|
| |