| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_4209 |
|---|
| Symbol | putA |
|---|
| ID | 8532646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 4640704 |
|---|
| End bp | 4644672 |
|---|
| Gene Length | 3969 bp |
|---|
| Protein Length | 1322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
|---|
| Protein accession | YP_003261540 |
|---|
| Protein GI | 261823434 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTTTA CCACGATGGG TGTAAAACTC GATGAGGAAA CACGTGAACG CATCAAGGCG
GCGGCACAGC GTATTGATCG TACACCGCAC TGGCTGATCA AACAGGCTAT TTTCCATTAC
CTCGAACGCC TCGAAAGTGG CCTCGACACT CCTGAAACAC CGCAATGGGC GAACGCGAGC
CACATTGAAG CAGGAGAGAT TATGCCGCAA TCTCGTGAAG AAGAAACCCA CCAACCCTTT
CTTGATTTCG CCGGGCAGGT TCTTCCCCAG TCCGTCATCC GCGCAGCCAT TACCTCTGCT
TATCGTCGGC CCGAGAACGA ATTTGTTCCT ATCTTGCTTG AACAGGCAAG ACTTACTGAC
GATATGTCGA AATTAACTCA AAATCTGGCT TATCGGCTGG CAAAGCAATT ACGCAGTCAG
AAATCCGGAA GTGGCCGTGC GGGCATTGTG CAAGGGTTGC TACAGGAATT TTCACTTTCT
TCTCAGGAAG GTGTGGCACT GATGTGTTTA GCGGAAGCGC TGCTGCGTAT TCCTGATAAA
TCGACGCGTG ATGCGCTGAT CCGCGACAAG ATCAGCAGAG GAAACTGGCA GGCGCATCTC
GGTCATAGCC CATCGCTTTT CGTGAATGCC GCAACCTGGG GGCTACTGTT TACCGGCAAG
CTGGTGGCGA CACACAATCA AGCACATTTG TCGAATTCGC TGAATCGCAT CATCGGTAAA
CGCGGCGAGC CGCTCATCCG CAAAGGCGTC GATATGGCCA TGCGACTGAT GGGAGAACAG
TTCGTCACGG GGGAAACCAT CGGTGAAGCG CTGGCGAATG CCCGCGAACG GGAGGGTAAA
GGTTTCCGCT ATTCCTACGA TATGTTAGGT GAAGCGGCGC TAACGGAACA CGATGCCGCT
GCCTATCTGA TCGCTTACCA ACAGGCGATT CATGCTATCG GCAAGGCCTC GAACGGGCGT
GGGATTTACG AAGGGCCGGG TATTTCCATC AAGCTTTCGG CGCTGCACCC GCGCTATAGC
CGTTCGCAGT ATGATCGTGT GCTCAATGAG CTGTACCCAC GGCTGTTATC GCTGACGCTG
CTGGCGCGCC AGTACGATAT CGGGATCAAT ATTGATGCGG AAGAAGCAGA TCGACTGGAG
ATCTCTCTCG ATCTGCTGGA AAAGCTCTGT ATGGATCCGC AACTGGTGGG GTGGAATGGT
ATCGGGTTTG TGATTCAGGC TTACCAGAAA CGTTGCCCAT ATGTGATTGA TATGCTGGTT
GAGTTGGCAC AGCGCAGTCA TCGGCGGCTG ATGATTCGTC TGGTGAAAGG GGCGTACTGG
GACAGTGAAA TTAAACGGGC GCAGATTGAC GGGCTGGAAG GCTATCCGGT CTACACGCGT
AAGGTCTACA CCGATGTGTC TTATCTGGCG TGCGCTCGTA AGTTGCTGGC TGTACCGAAT
CTGATTTATC CGCAGTTCGC CACCCACAAC GCGCAGACGT TAAGCGCGAT CTACCACATG
GCGGGTAACA ATTATTATCC TGGTCAGTAT GAGTTCCAGT GCCTGCACGG TATGGGAGAA
CCGCTCTATG ATCAGGTGGT CGGTGCGGTT GCCGACGGTA AACTTAACCG TCCGTGTCGT
ATCTATGCCC CGGTCGGAAC CCATGAAACG CTACTGGCTT ATCTGGTGCG ACGCCTGCTG
GAAAACGGCG CGAATACCTC GTTTGTTAAC CGTATTGCGG ATACATCTAT GGCGCTGGAA
ACGCTGATTG CCGATCCGGT TAGCAGCGTA GAGGCACTGG CAAAAGTAGA ATGGAGTATG
GGCGCACCGC ATCCCCATAT TCCGCTGCCG CATCAGCTAT ATGGGCAGGC ACGGAAAAAT
TCGAGCGGGC TTGATCTCTC GAATGAGCAT CGGCTAGCTT CGCTCTCCAG CGCGCTGCTA
AGTCAGGCGG TGCAGCCGTA TGCCGAGCCG ATGATTGAAG GGGAGTGCGA GGCGAGTGAA
CAAAAGCCCG TAGTGAACCC CGCCGACGTG CGCGATGTGG TGGGCTATGT CCGTGATGCC
TCCGTGGCGG ATGTTGAACG GGCAATCGAT GCTGCGGTGC ATGCCGGTGC CATCTGGTTT
GCGACGCCGC CTGCTGAGCG TGCCGCGATA TTGAATCGGG CCGCCTCATT GATGGAAGGG
CAGTTACAAA GCCTGCTGGG GCTGTTGGTG CGGGAAGCCG GTAAATCCTT TAGCAACGCG
ATTGCGGAAG TGCGTGAAGC GGTCGATTTC TTACGCTATT ACGCGGGGCA GGTGCGAGAC
ACCTTCACCA ATGATACCCA TCGTCCTCTG GGTCCCGTCG TTTGCATTAG TCCGTGGAAT
TTCCCGCTGG CAATCTTTAC CGGACAAATT TCTGCTGCAC TGGCGACAGG AAACAGCGTA
TTGGCGAAAC CGGCTGAACA AACGCCGCTG ATTGCGGCGC AGGCCGTGCG TATTCTGCAT
GAAGCGGGGA TCCCCTTGGG TGTGTTGCAA CTGCTGCCTG GACAAGGAGA AACGATAGGC
GCGTCGTTGG TGAACGATGA ACGGGTACGT GGCGTGGTGT TTACCGGTTC GACGGCTGTA
GCCAAAACCC TGCAACGTAG CATTGCTGGC AGACTCGATC CACAGGGGCG TTTGACGCCG
CTGATTGCCG AAACGGGTGG CCTGAATGCC ATGATTGTCG ACTCGTCTGC ACTAACGGAA
CAGGTGGTGA ATGACGTTAT TGCCTCTGCG TTCGACAGCG CCGGACAGCG TTGCTCTGCG
CTGCGCCTGC TGTGCCTGCA AGAAGATATC GCGGATCGCA CGCTGGCTAT GCTGCGCGGC
GCGATGGCGG AGTGTCGAAT GGGGGATCCT GAACGACTAT CGACCGACAT CGGCCCGCTG
ATTGACGCCG AAGCGAAAGA GAATGTGGAT CAGCATATTC AGACGATGCG GGCGAAAGGT
CATACCGTAT TTCAGGCTGC GCATCCGCAG GACGAAGAGA CATGGCGGCA CGGAACGTTT
GTAAAACCGA CCCTAATCGA ATTGGGCAAT ATAGACGAGC TGAAAAAAGA GGTTTTTGGT
CCAGTTTTAC ACGTCATTCG CTATCAAAGC CAGCAGTTGG ATACCGTGAT TGAGCAGATC
AACGCGGCGG GTTATGGCCT GACGCTGGGC GTACATACGC GTATTGATGA AACTATCCAG
CGTGTGACGA ACAGGGCAAA GGTGGGTAAC CAGTACGTGA ACCGCAATAT GGTGGGAGCC
GTTGTCGGCG TTCAACCGTT TGGCGGAGAA GGCTTATCAG GAACCGGGCC AAAGGCCGGC
GGACCGCTTT ATCTATACCG CTTACTGGCA CATCGACCGG ACAACGCGTT TGCAGCAGAA
TTCGCCAAAC AGAATCGTGA GCAGGCACCG GATACTTCTG CCCAAATATC GCTTCTGGCG
GGACTACAGG CGTTGGAAGA CTGGGCGATT AGCGGTGAGC GTCACGATCT GGCGGCGCTG
TGTCAGCGCT ATAAAGAGCA TAGTGTTAGC GGAACAACGC TACAGTTGTC TGGCCCGACA
GGGGAAAGTA ATACGTATAC GTTGTTGCCA CGTGAGCAGA TTCTATGTCT GGCAGATAAT
GAGGACGACC GTTTGATTCA GGCGGCAGCG GTGCTGGCAA CGGGCGGAAA ACTCCTGTGG
CCTGAAGGTA AACAGGAGAA AACGCTCTAC GAACGTTTAC CGCAGAAGGT GCAGTCGCGT
ATTCAGCTTG TACATAACTG GCAACGCCAT GATGGGGTGT CTTTTCACGG TGTAATTTAT
CATGGCGATG CCGATCGGTT ACGGCAGATC AGCGAAGCAC TCGCAGAACG TGATGGGCCG
GTTATTCCGC TGCTGGGCTA CGCGCAGGGT GATATCCATG TTCAACTGGA GCGTCTGCTG
AGTGAACGCT CTTTGAGCAT CAATACCGCC GCCGCGGGCG GTAACGCCAG CCTAATGACG
ATAGGTTAA
|
|---|
| Protein sequence | MGFTTMGVKL DEETRERIKA AAQRIDRTPH WLIKQAIFHY LERLESGLDT PETPQWANAS
HIEAGEIMPQ SREEETHQPF LDFAGQVLPQ SVIRAAITSA YRRPENEFVP ILLEQARLTD
DMSKLTQNLA YRLAKQLRSQ KSGSGRAGIV QGLLQEFSLS SQEGVALMCL AEALLRIPDK
STRDALIRDK ISRGNWQAHL GHSPSLFVNA ATWGLLFTGK LVATHNQAHL SNSLNRIIGK
RGEPLIRKGV DMAMRLMGEQ FVTGETIGEA LANAREREGK GFRYSYDMLG EAALTEHDAA
AYLIAYQQAI HAIGKASNGR GIYEGPGISI KLSALHPRYS RSQYDRVLNE LYPRLLSLTL
LARQYDIGIN IDAEEADRLE ISLDLLEKLC MDPQLVGWNG IGFVIQAYQK RCPYVIDMLV
ELAQRSHRRL MIRLVKGAYW DSEIKRAQID GLEGYPVYTR KVYTDVSYLA CARKLLAVPN
LIYPQFATHN AQTLSAIYHM AGNNYYPGQY EFQCLHGMGE PLYDQVVGAV ADGKLNRPCR
IYAPVGTHET LLAYLVRRLL ENGANTSFVN RIADTSMALE TLIADPVSSV EALAKVEWSM
GAPHPHIPLP HQLYGQARKN SSGLDLSNEH RLASLSSALL SQAVQPYAEP MIEGECEASE
QKPVVNPADV RDVVGYVRDA SVADVERAID AAVHAGAIWF ATPPAERAAI LNRAASLMEG
QLQSLLGLLV REAGKSFSNA IAEVREAVDF LRYYAGQVRD TFTNDTHRPL GPVVCISPWN
FPLAIFTGQI SAALATGNSV LAKPAEQTPL IAAQAVRILH EAGIPLGVLQ LLPGQGETIG
ASLVNDERVR GVVFTGSTAV AKTLQRSIAG RLDPQGRLTP LIAETGGLNA MIVDSSALTE
QVVNDVIASA FDSAGQRCSA LRLLCLQEDI ADRTLAMLRG AMAECRMGDP ERLSTDIGPL
IDAEAKENVD QHIQTMRAKG HTVFQAAHPQ DEETWRHGTF VKPTLIELGN IDELKKEVFG
PVLHVIRYQS QQLDTVIEQI NAAGYGLTLG VHTRIDETIQ RVTNRAKVGN QYVNRNMVGA
VVGVQPFGGE GLSGTGPKAG GPLYLYRLLA HRPDNAFAAE FAKQNREQAP DTSAQISLLA
GLQALEDWAI SGERHDLAAL CQRYKEHSVS GTTLQLSGPT GESNTYTLLP REQILCLADN
EDDRLIQAAA VLATGGKLLW PEGKQEKTLY ERLPQKVQSR IQLVHNWQRH DGVSFHGVIY
HGDADRLRQI SEALAERDGP VIPLLGYAQG DIHVQLERLL SERSLSINTA AAGGNASLMT
IG
|
|---|
| |