| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_3970 |
|---|
| Symbol | |
|---|
| ID | 8532403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 4393160 |
|---|
| End bp | 4394449 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | 16S rRNA methyltransferase B |
|---|
| Protein accession | YP_003261308 |
|---|
| Protein GI | 261823202 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.121594 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCT CATACAATCT ACGCAGTATT GCCGCAAAAG TGGTGGGACA AGTTCTGGAT
CAGGGGCAAT CACTCAGCGC CTTATTGCCT GTTCATCAAC GTGACGTTTC CGATAAAGAT
CGTGCACTTT TACAAGAGCT TTGCTTCGGC GTATTACGCG TTCTACCGCA GTTGGAATGG
TGTATTCAAC AACTGATGGC TAAGCCCCTG ACGGGCAAAC AACGCACACT ACATTACCTC
ATCATGGTTG GTATCTACCA ATTACACTAC ACTCGTATCC CCCCCCATGC CGCTCTGGCA
GAAACGGTAG AAGGTGCTGT CGCGTTAAAG AGACCACAGC TTAAAGGGTT GATTAATGGC
GTATTACGCC AATTTCAACG TCAGCAGGAA GAACTCATGC AGCGTGAGGC AACAAACTCG
TCTCACTACC TGCATCCAAG CTGGCTGCTA GCACGTATTG AGCATGCCTA TCCAGACCAC
TGGCAAAGTG TTGTTGATGC GAATAATCAA CGCCCTCCAA TGTGGCTGCG CGTGAATCGG
TTACACCATA CACAAGAAGC GTATTTAGAC TTGCTGGCGC AAGAGGGAAT CGAAGCGTTT
GCTCATCCTG ACTACGCCGA TGCGATACGA CTTGCTTCTC CCTGCGCCGT CGATCTCTTA
CCGGGCTTTG CACAAGGGTG GGCAACAATA CAGGATGCTT CGGCTCAAGG CTGCGTCTAC
TGGCTTGAGC CACAAGATGG CGAGCAAATC CTCGATCTCT GCGCCGCACC CGGTGGAAAA
ACAACGCACA TTTTAGAAGC TGCGCCAAAA TCTCACGTAC TCGCTGTCGA TATTGATGAA
ACGCGTTTAG GCCGAGTAAG AGAAAATTTA CTGCGGTTAC AAATGCACGC AGAAGTAAAA
CAAGGCGATG GCCGCTACCC CGATTCATGG TGTGCAGGCC GCATGTTTGA TCGAATTCTG
TTGGATGCGC CGTGCTCCGC TACTGGCGTG ATTCGTCGTC ACCCTGATAT CAAATGGCTA
CGCCGAGACA GGGATATCGA GGAATTGGTT GCACTGCAAA AAGAGATTAT TGATGCCATC
TGGCCACATC TAAAGCCGGG CGGCACAATG GTCTACGCGA CCTGCTCCAT TCTGCCGCAA
GAGAATGCCC AGCAAGTCAC AGATTTCTTG TCTCGCCATG CCGATGCAAC GCTTGTTGAT
ACAGGTACAA GTGAAATACC GGGTATACAG ATGCTCCCCC ATGCTGATGG TGGCGACGGT
TTCTTTTATG CGAAGCTGGT AAAAAACTGA
|
|---|
| Protein sequence | MKSSYNLRSI AAKVVGQVLD QGQSLSALLP VHQRDVSDKD RALLQELCFG VLRVLPQLEW
CIQQLMAKPL TGKQRTLHYL IMVGIYQLHY TRIPPHAALA ETVEGAVALK RPQLKGLING
VLRQFQRQQE ELMQREATNS SHYLHPSWLL ARIEHAYPDH WQSVVDANNQ RPPMWLRVNR
LHHTQEAYLD LLAQEGIEAF AHPDYADAIR LASPCAVDLL PGFAQGWATI QDASAQGCVY
WLEPQDGEQI LDLCAAPGGK TTHILEAAPK SHVLAVDIDE TRLGRVRENL LRLQMHAEVK
QGDGRYPDSW CAGRMFDRIL LDAPCSATGV IRRHPDIKWL RRDRDIEELV ALQKEIIDAI
WPHLKPGGTM VYATCSILPQ ENAQQVTDFL SRHADATLVD TGTSEIPGIQ MLPHADGGDG
FFYAKLVKN
|
|---|
| |