Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_3644 |
Symbol | |
ID | 8532070 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | + |
Start bp | 4014133 |
End bp | 4014612 |
Gene Length | 480 bp |
Protein Length | 159 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | |
Product | type VI secretion system effector, Hcp1 family |
Protein accession | YP_003260986 |
Protein GI | 261822880 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.272221 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTAATT TGATTTATGC CAGCATTAAT GGTCAAAAAC AGGGTTTAAT ATCATCCGGT TGCTCAACGC TTGACTCAAT TGGCAATCGC TACCAAACTG GTCATGAAGA TCAAATACAA GTATTAGGCT TAAACCACAG TATCAGCCGC GATCAAAATG TTGCCCATCA CCCAATTAAT TTTGTTAAGC CAATCGACAA ATCGTCCCCA TTATTAGGGA TGGCAATCTC TTATAATGAA AAGGTGGATG TCACATTTTA TTTTTACCGC GTCAATTCCG CAGGGCAATT AGAACTTTAT TATGAAGTTA CATTAACGGA TGCGAACATT GTCGATGTCA CCTGTGTCTA TCCGCACGTC ATCGATAACA ATGAAATCAT GCCGTATGAA AAAGTCCAGC TAAAATACAA AACCATCGCA TGGAACCATA AGATTGCAGG AACATCGGGT TACAGTATCT GGGAGGAAAT GAGCCTCTAG
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Protein sequence | MANLIYASIN GQKQGLISSG CSTLDSIGNR YQTGHEDQIQ VLGLNHSISR DQNVAHHPIN FVKPIDKSSP LLGMAISYNE KVDVTFYFYR VNSAGQLELY YEVTLTDANI VDVTCVYPHV IDNNEIMPYE KVQLKYKTIA WNHKIAGTSG YSIWEEMSL
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