Gene Pecwa_3454 details

Gene Information

• Locus tag: Pecwa_3454
• ID: 8531874
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: -
• Start bp: 3795317
• End bp: 3797284
• Gene Length: 1968 bp
• Protein Length: 655 aa
• Translation table: 11
• GC content: 56%
• Product: type VI secretion system Vgr family protein
• Protein accession: YP_003260798
• Protein GI: 261822692

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCCAACA GTACAGGATT ACAGTTCACC GTAAAGGTCG GCGCATTGGC GGCCGGCACC 
TTTGCGGTGG TGGATTTCAG GCTGGATGAG GGGCTGAATC GGCCTTTCAG CCTGTCGCTG 
AGTCTGGCGA GCGTGTTGCC GGATGTGGAT TTTGGCGCGG TGCTGGACCA ACCGTGCGAG 
CTGATGATTT GGTATGAGGG TGAGTTGAAA CGCCGGATCA GTGGGATTAT CAGTGGTTTC 
ACACAGGGCG ACACCGGTTT TCGCCGCACC CGCTATCAGG CGGAAGTGCG TCCGGAGCTG 
TGGCGGTTGG GATTACGCAC CAACGCCCGT ATCTTTCAGG CCCAGAAGCC GGACGCGATT 
ATCGGTACTC TGCTGGAAGA AGCCGGCATT ACCGACTACG CCTTTTCGTT ACGTCATGAC 
CATGCCCCGC GCGAGTACTG CGTTCAGTAC CGGGAAAGCG ATTTGGCGTT TGTCACCCGA 
CTGGCGGCAG AGGAAGGCTT GTACTTCTTC CACGAGTTTG AGGAAGGCAA ACACCGTGTC 
GTCTTTGCCG ACGATGCGGG AGCGCTGGCT AAGGGCCCTG AGCTGTTCTT CAATTTGGCG 
GCGCAGGGGC TGAGCGAGGG GGAATACATC CGGCGTTTCC ACTATGCGGA GCGGGTGAGC 
ACGGCAGAAG TGGAGTTGAA GGATTACAGC TTCAAGACAC CGGCCTACGG GCTGTCACAT 
AAGAAGATGA GTAGCGAATT GGATCACCAA CGTGAAAGTT ATCAGCATTA CGACTATCCA 
GGACGTTATA AACAAGATCC GAGCGGCAAA GCGTTCAGCA ACTACCGGCT GGATGCGCTG 
CGCTCTGGAG CGGTGACGAG CGAAGGGGAA TCGAACTGCG CAGGGCTGAT GCCGGGCAAC 
ACGTTTACTC TGACGGAACA CCCGAATGCG ACGCTGAATA CGGTGTGGCA AACGGTGAGC 
GTGATGCATA TCGGGCAGCA GTCGCAGGCG CTGGAGGAGG AAAGCGGCGG TGAGCCGACG 
ACCATGAGCA ACAGCTTTGC GGTTATCAGT GCGAAAAAAA ACTGGCGGGC CGTCATGCCG 
TACAAACCGA TGGTGGACGG CCCGCAGATT GCGAGGGTAG TGGGGCCGGC TGGCGAAGAA 
ATCTACTGCG ACAAGTACGG GAGAATCAAA CTGCAATTCC CGTGGGACCG TTATGGGGCG 
AATAATGACC AGAGTTCCTG CTGGGTGCGT GTTAGCCAGG GCTGGGCGGG CGGCCAATAC 
GGACTGATCG CTATCCCGCG TATCGGTCAT GAAGTGATTG TTAGCTTCCT CGAAGGTGAC 
CCGGATCAGC CGATTGTCAC TGGACGTACC TTCCACGCGA CAAATCCAGC GCCGTATCCG 
CTGCCAGCCA ATAAAACACG TACCACGCTA CGTTCAAAAA CACACAAAGG AAAAGGCTTT 
AACGAACTCA GTTTTGAGGA CGCGACCGAT AACGAAGAGA TCTTCCTTCA TGCCCAGAAG 
AACATGGCAG TACGGGTACT GAATTCTAAA GATGAGCGAG TGGACTATAA CCGAACAACC 
AGTATTGGGC ATGATGAGGC GCTGGTGGTC GCCAATGACC GTAAGATTAC GGTGGAAGGT 
AATCAGGATC ACAAAATCAC AGGCAATAAT TTATCGCTGA CGGAAGGCGA TCGAGGCATA 
CAGGTTAAGG GCGATTTGGC GCAGAAAATC AGCGGCGTGT TCAGCGTGGA CAGCAATGGC 
GATCTGACGC TGCAAAGTGG CAGCAAACTG ACACTCCGAG TTGGAGGCAG CTTTGTGGTT 
ATCCACGCCG GAGGCGTTGA CATCAAAGGG CCTGCTATCA ACCTGAACTC AGGCGGCAGC 
CCAGGCGACT TGGCACTACC CGCCGATCCG GCGATATTGA AAGCGGCGGC GGCACAGGGA 
ACGATGTTTG TGGCGCATTG TCCGGCAAAG GAAAAAAAAG GTGAGTGA 

 

Protein sequence

MANSTGLQFT VKVGALAAGT FAVVDFRLDE GLNRPFSLSL SLASVLPDVD FGAVLDQPCE 
LMIWYEGELK RRISGIISGF TQGDTGFRRT RYQAEVRPEL WRLGLRTNAR IFQAQKPDAI 
IGTLLEEAGI TDYAFSLRHD HAPREYCVQY RESDLAFVTR LAAEEGLYFF HEFEEGKHRV 
VFADDAGALA KGPELFFNLA AQGLSEGEYI RRFHYAERVS TAEVELKDYS FKTPAYGLSH 
KKMSSELDHQ RESYQHYDYP GRYKQDPSGK AFSNYRLDAL RSGAVTSEGE SNCAGLMPGN 
TFTLTEHPNA TLNTVWQTVS VMHIGQQSQA LEEESGGEPT TMSNSFAVIS AKKNWRAVMP 
YKPMVDGPQI ARVVGPAGEE IYCDKYGRIK LQFPWDRYGA NNDQSSCWVR VSQGWAGGQY 
GLIAIPRIGH EVIVSFLEGD PDQPIVTGRT FHATNPAPYP LPANKTRTTL RSKTHKGKGF 
NELSFEDATD NEEIFLHAQK NMAVRVLNSK DERVDYNRTT SIGHDEALVV ANDRKITVEG 
NQDHKITGNN LSLTEGDRGI QVKGDLAQKI SGVFSVDSNG DLTLQSGSKL TLRVGGSFVV 
IHAGGVDIKG PAINLNSGGS PGDLALPADP AILKAAAAQG TMFVAHCPAK EKKGE