Gene Pecwa_3090 details

Gene Information

• Locus tag: Pecwa_3090
• ID: 8531499
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: -
• Start bp: 3368121
• End bp: 3368807
• Gene Length: 687 bp
• Protein Length: 228 aa
• Translation table: 11
• GC content: 50%
• Product: colicin uptake protein TolQ
• Protein accession: YP_003260439
• Protein GI: 261822333

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0237739
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACTGACA TGAACGTTTT TGATTTGTTC CTGAAGGCAA GCCTTCTGGT CAAACTAATC 
ATGCTGATTT TAATCTGTTT TTCTATCGCT TCCTGGGCGA TCATTATTCA ACGTACCCGA 
ATTTTGAATG CAGCGACGCG TGAGGCCGAG GCATTCGAGG ACAAATTTTG GTCGGGTATC 
GAGCTGTCGC GTCTCTATCA GGAAAGTCAA ACTCGCCGTG ATAGCCTGAC TGGCACTGAA 
CAAATCTTCC ATTCTGGTTT CAAAGAATTT GCGCGGTTGC ATCGCGTTAA CAGTCATGTG 
CCGGAAGCTG TCGTTGAAGG TGCATCCCGT GCGATGCGCA TTTCAATGAA TCGTGAATTG 
GAAACGCTGG AAACTCACAT TCCCTTTTTG GGCACCGTGG GCTCCATTAG CCCGTATATC 
GGCCTGTTCG GTACCGTTTG GGGGATTATG CATGCTTTCA TCGCGCTGGG TGCCGTGAAG 
CAGGCAACCT TACAAATGGT TGCCCCTGGT ATTGCAGAAG CGTTGATTGC AACGGCAATC 
GGTCTGTTTG CGGCGATCCC TGCGGTCATG GCGTATAACC GCCTTAACCA GAGGGTAGGT 
AAACTGGAGC AGAACTACGA CAACTTTACC GAAGAGTTTA TCGCGATCCT GCACCGTCAG 
GCGTTCTCCA GCGACAACAG CAAGTAA 

 

Protein sequence

MTDMNVFDLF LKASLLVKLI MLILICFSIA SWAIIIQRTR ILNAATREAE AFEDKFWSGI 
ELSRLYQESQ TRRDSLTGTE QIFHSGFKEF ARLHRVNSHV PEAVVEGASR AMRISMNREL 
ETLETHIPFL GTVGSISPYI GLFGTVWGIM HAFIALGAVK QATLQMVAPG IAEALIATAI 
GLFAAIPAVM AYNRLNQRVG KLEQNYDNFT EEFIAILHRQ AFSSDNSK