| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_2939 |
|---|
| Symbol | |
|---|
| ID | 8531345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | - |
|---|
| Start bp | 3199372 |
|---|
| End bp | 3200361 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | |
|---|
| Product | transport system permease protein |
|---|
| Protein accession | YP_003260295 |
|---|
| Protein GI | 261822189 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACAGA GCATCGTGAC GGCAGTGGGT ATCACATTAC TGCTGCTGAG CATCGTCGCC
AGCCTGATGT TGGGACAGAC CACGATTTCG TTTGGTGCGG TGTTCAACGC GCTATTCCAT
TACGATCCGC AGCAGATCGA TCAGATACTG GTGTTGACGA CCCGCCTGTC ACGGACGGTG
ATTGCCGTCG TTGTTGGTGC CAGTCTTGCT GTTGCCGGTG CTTTAATGCA GGCGTTGACG
CGTAATCCGC TGGCTTCGCC GGGGATATTC GGCATTAATG CTGGAGCCAT GTTTTCTGTC
GTGCTGCTGT CCTCGCTGTT GACCTTTTCC TCGCAGGTAG CGCTGGCCTG GACGGCCTAT
CTGGGCGCGG CTGTGGCTGG CGTCATGGTG TATGCGCTGG GAACGCTCGG CAATGCGCGT
TCCAGTCACT TACGCATCGT GCTGGCTGGT GCCGCGATTA GCGCACTGTT TATCTCGTTT
ACGCAGGCTC TGCTGGTGAT CAATCAGGAC GGGTTGGACA GCATGCTGTT CTGGCTGGCC
GGTTCGGTGT CTGGGCGCAA TCTGTCGATG TTGTTGCCGC TGCTGCCATA CTTTGTTATT
GCGCTCTTCC TCGCACTGCT GCTGGCGCGT CACCTGAATA TTCTGGTGGC GGGCGACGAG
ATCGCCAAAG GGCTGGGACA GCGTACCGCG CTGGTGCGTG CGTTGTCAGG GCTGTGCGTG
ATCGGGTTGG CGGGCGGCGC GGTGGCGATA GCTGGAAATA TCGGTTTTAT CGGGTTGATT
GTGCCGCATA TTGTGCGTCG CGTGCTGTCT GCCGATCACC GCTGGCTGTT GCCCGGCTGC
GCGATTTTCG GTGCCACGTT GTTGTTGCTG GCTGATGTCG TTGCACGCTT GCTGATTGTG
CCGCAGGAAG TGCCGGTTGG CGCAATGACA GTGCTGCTGG GCGCGCCTTT CTTCATTTAT
CTGGCGAGAA GGGGGATGCG GCATGGATAA
|
|---|
| Protein sequence | MRQSIVTAVG ITLLLLSIVA SLMLGQTTIS FGAVFNALFH YDPQQIDQIL VLTTRLSRTV
IAVVVGASLA VAGALMQALT RNPLASPGIF GINAGAMFSV VLLSSLLTFS SQVALAWTAY
LGAAVAGVMV YALGTLGNAR SSHLRIVLAG AAISALFISF TQALLVINQD GLDSMLFWLA
GSVSGRNLSM LLPLLPYFVI ALFLALLLAR HLNILVAGDE IAKGLGQRTA LVRALSGLCV
IGLAGGAVAI AGNIGFIGLI VPHIVRRVLS ADHRWLLPGC AIFGATLLLL ADVVARLLIV
PQEVPVGAMT VLLGAPFFIY LARRGMRHG
|
|---|
| |