Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_2816 |
Symbol | rne |
ID | 8531220 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | + |
Start bp | 3079941 |
End bp | 3083306 |
Gene Length | 3366 bp |
Protein Length | 1121 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | |
Product | ribonuclease E |
Protein accession | YP_003260176 |
Protein GI | 261822070 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00267025 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGAA TGTTAATTAA CGCAACTCAG CAGGAAGAGT TGCGTGTTGC CTTGGTTGAT GGTCAACGGC TGTATGATTT GGATATCGAA AGTCCAGGCC ATGAGCAGAA GAAAGCAAAT ATCTACAAAG GTAAGATCAC TCGTATCGAA CCCAGTCTTG AAGCAGCCTT TGTTGATTAC GGCGCTGAGA GGCACGGTTT CCTCCCTCTT AAAGAAATTG CCCGCGAATA CTTCCCCAGT AACTATGCTT CCCATGGTCG GCCTAACATT AAAGACGTGT TACGTGAAGG TCAGGAAGTC ATTGTTCAGG TGGACAAAGA AGAGCGTGGC AATAAAGGGG CGGCACTGAC CACCTTTATC AGCCTGGCGG GTAGCTATCT GGTCTTAATG CCGAATAACC CTCGAGCAGG CGGTATCTCG CGCCGCATCG AAGGCGATGA CCGTACCGAA CTCAAAGAAG CGTTGGGATC GTTGCAACTG CCCGATGGCA TGGGGCTCAT TGTTCGTACA GCCGGCGTGG GTAAATCCGC TGAAGCACTG CAATGGGATC TGGCTTTCCG TCTGAAACAC TGGGACGCGA TCAAAAAAGC CGCGGAAGGT CGCTCGGCAC CGTTCCTGAT TCATCAGGAA AGTAACGTGA TCGTCCGTGC TTTCCGTGAT TATCTGCGCC AGGATATTGG CGAGATTCTG ATCGACAACC CAAAAATTCT CGAACTGGCG AAAGAACATA TTTCTGCGCT GGGTCGCCCC GATTTCAGCA GCAAAATCAA ATTGTACAGT GGTGAAATCC CACTTTTCAG CCACTATCAG ATCGAATCGC AGATTGAATC TGCTTTCCAG CGTGAAGTGC GTCTGCCATC CGGCGGCTCT ATCGTTATCG ATACCACTGA AGCACTGACT GCGATTGATA TCAACTCCGC CCGTGCAACA CGCGGTGGTG ATATTGAAGA AACTGCATTT AATACTAACC TAGAAGCCGC AGATGAAATT GCCCGTCAAC TTCGCCTGCG TGACCTCGGT GGTCTAATCG TCATCGACTT CATCGATATG ACCCCCGTCC GCCACCAGCG TGAAGTTGAA AACCGCCTAC GCGATTCAGT ACGTCAAGAT CGTGCGCGTA TTCAGATCGG CCGGATTTCC CGCTTCGGTC TGTTGGAAAT GTCACGTCAA CGCTTGAGTC CTTCACTGGG TGAATCCAGC CATCATGTTT GCCCACGCTG TAGCGGCACA GGCACGATTC GTGACAATGA ATCGCTTTCA CTGTCGATTC TTCGCCTGAT TGAAGAAGAA GCGCTGAAAG AAAACACCAA AGAAGTTCAT GCGATTGTTC CAGTCCAGAT TGCGTCTTAT CTGCTGAACG AGAAGCGTGA CGCCGTTAAC GCCATTGAGA CACGCCAGGG CGGCGTACGT GCGATCATCG TGCCACACGA CGGCATGCAA ACACCGCACT ACTCCGTGGT TCGTGTCCGT AAAGGCGAAG AAAAGCCAAC ACTCAGCTAT TTGCTGCCTC AGCGTTTGGA AACAGAAACG CAGCAGTTGC AAGACGAACA AACGATCGAG CGTAAACAGC CTGAGCAACC TGCTTTAGCA ACGTTCAGCA TGGCTGAAAT GCCTGAAGAA ACCACGCCAC CAGTTGCCAA AGCGACTCCA GCAGTAGTGA AAGCCGCGGA AGAAACGCAG CCTGGTCTTA TTAGCCGTTT CTTCGGTGCT TTGAAAAGCG TCTTTGCTTC TGAACCAGCC GTAAAAGCTG CGGATAACGT TGACGAGAAG AAAGCTGAAG AAGAAAAATC TACTGAAGGC CAACGCTCTG AACGTCGGAA TTCACGCCGT CAGGGTAATA ATCGCCGTGA CCGTGGCTCT CGTGACAATC GTGACAATCG TGACAATCGT GACAATCGTG ACAATCGTGA CAATCGTGAC AATCGTGAAC AGCGTGATGA TCAGCGCCGT AACAAGCGAC AAAATGATGA AACGGTTACT GAAACTCGCG TTGCGGAAAA TGCGGAGAAA GCGGGTTCGG AAGAACAGCC ACGCCGTGAA CCGCGAGCTG AACGTCAGCG TCGTCGTCAG GACGAGCGCC GCCCAGCGCC AGCAGAAGAA AAAGTTCAGC CAGCGACCGC GGATTCCGAT GACAATGCAG CCGATCAGGA TAAACCTACT CAGGTTATGC AGCGTCGCCA ACGTCGTCAG TTGACGCAGA AAGTACGCGT TCAGTCTGAA GCGCAGCAGG ATACTCTCTC TGATAACACG GCACCGGTTT CTGAAGCACC AGAGCAGGTT CAATCTTACG CTAAGCCAAG CGATGCTGTT GTAGACGGTA ACGAGAGCGA TAACGAACAA AACGATGCAA ATCGTAGCAA TGGCGAAAAT GGCGGTATGC CGCGTCGCTC ACGCCGTTCG CCTCGCCACC TGCGTGTCAG CGGCCAGCGT CGTCGTCGCT ATCGCGATGA ACGTTACCCA TCTCAGTCGC CGATGCAGTT GGAATTTGCT GCTGCATCAC CGGAGATGGC ATCAGGGAAA GTGTGGGTCA GCTACCCTGT CGCCCAGCCA CAGCAGGCTG AAAGCCAACC GTTGGAAGAG GACGTGGCAG CTATCGAAAC ACCGCTGTTA CCCGTCGTTG TCGACGTCGC TGTGACTGCA CAAGTCGATA CCGCTGAATC TAACGCGATT GAAAACGTTG CAGGCGTTAC TGAAACAGTC GTTCAGGAAG AGACTGTTGT AACAGCAACA GCGCAATCCG CGGACGTTGT TCAGGACAGC GATATCGCTG ATGTCGAAGT GAGTGCGGCG GATCAAAACA CCATCGTCGA GCCAGTTACT GAGCACACGG CGATCGATGA TGTCATCGCG CCGGTTGCAG TAAGTGTGGT CGAAGAAGTA AAAGCCGCTG AGGTTGATGA TACAGCTCAG ACAACTGAAG ACACACAGAC CGTTGAAGCT GTCGTTGCTG TTGAAACTGC TGTTGCTGAA GAAAAATCAG CAGATGACAT CGCTGCTGAT ACGACCGAGA CAGTTGATGT GGCAGAACCG GTGTCTACCC CGGTGGTTTC CGCAGTACAG GAAATCAGCC AGCCACAAAG CGTTCAGGAT GAGCCAGCGA TCGCTACCAG CGCACAAGCT GTTGTAGAAG AACCTGTTCC GAGCGTAACA AAAGCAGTAA CCGTCATTGA ACAGCCTCGC TATAAACTCC ATGCAACGGC ACCAATGACT AAAGCTCCGG CTCCGTCATA CCACTCCGAG CCTGCTCGAC ACAGTGATTG GGTCCGTCCA GCCTATCCGT TCTCAGGAAA AGGCTCGGCA GGCGGTCATG CCGCAGTTAA TCAGTCAACT GCGCCAGCAA CCAAGCCTAC GCCAGCCAAC GAGTAA
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Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY GAERHGFLPL KEIAREYFPS NYASHGRPNI KDVLREGQEV IVQVDKEERG NKGAALTTFI SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALGSLQL PDGMGLIVRT AGVGKSAEAL QWDLAFRLKH WDAIKKAAEG RSAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKILELA KEHISALGRP DFSSKIKLYS GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDTTEALT AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQREVE NRLRDSVRQD RARIQIGRIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTIRDNESLS LSILRLIEEE ALKENTKEVH AIVPVQIASY LLNEKRDAVN AIETRQGGVR AIIVPHDGMQ TPHYSVVRVR KGEEKPTLSY LLPQRLETET QQLQDEQTIE RKQPEQPALA TFSMAEMPEE TTPPVAKATP AVVKAAEETQ PGLISRFFGA LKSVFASEPA VKAADNVDEK KAEEEKSTEG QRSERRNSRR QGNNRRDRGS RDNRDNRDNR DNRDNRDNRD NREQRDDQRR NKRQNDETVT ETRVAENAEK AGSEEQPRRE PRAERQRRRQ DERRPAPAEE KVQPATADSD DNAADQDKPT QVMQRRQRRQ LTQKVRVQSE AQQDTLSDNT APVSEAPEQV QSYAKPSDAV VDGNESDNEQ NDANRSNGEN GGMPRRSRRS PRHLRVSGQR RRRYRDERYP SQSPMQLEFA AASPEMASGK VWVSYPVAQP QQAESQPLEE DVAAIETPLL PVVVDVAVTA QVDTAESNAI ENVAGVTETV VQEETVVTAT AQSADVVQDS DIADVEVSAA DQNTIVEPVT EHTAIDDVIA PVAVSVVEEV KAAEVDDTAQ TTEDTQTVEA VVAVETAVAE EKSADDIAAD TTETVDVAEP VSTPVVSAVQ EISQPQSVQD EPAIATSAQA VVEEPVPSVT KAVTVIEQPR YKLHATAPMT KAPAPSYHSE PARHSDWVRP AYPFSGKGSA GGHAAVNQST APATKPTPAN E
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