| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_2464 |
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| Symbol | |
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| ID | 8530865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium wasabiae WPP163 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013421 |
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| Strand | - |
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| Start bp | 2668281 |
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| End bp | 2671904 |
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| Gene Length | 3624 bp |
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| Protein Length | 1207 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_003259832 |
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| Protein GI | 261821726 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAATA TACTTTTTGC TGTGCTGACC AGCCGTCTCG CTTGGGGCTT TGTTGGTATT
ACTGCGCTCG CCTTTATCAT CTGGGTGATT GGCCCGGTGT TTTCCATTGC CGATTCACGC
CCGCTTGCAC CAGAGCATAA TCGCATCATC AGTATCGCGC TGCTCTATCT GGTGTGGGGA
CTGAGTCAGG CGATCCCGCG CCTGTACAAC TTCTGGCTTA ACCGCAAGTT GATGTCGAGT
CTGGAAACTG GCAAAACCGA TGCACCGGAA CGCCTGACCA ACGAAGAGCA GGCCTTGGCG
AGCCGTTTTT CTGAAGCGAC GGGTATCCTG AAAAAAGCAC ACTTCCAGCG CAATAGCAGT
AAAGGCGCCC CGTTCTGGGC GCAGCGCTTC AGCCATCAAT ATCTCTATCA GTTACCGTGG
TGCATGATTA TCGGTGCGCC GGGGGCGGGT AAAACCACAG CGCTGGTTAA CTCGGGCCTG
CAATTCCCGT TAGCGGATAA ATTTGGTAAA GCGGCGCTGC GCGGTATTGG TGGTACGCGT
AACTGCGACT GGTGGTTCAC CAACGAAGCG GTGCTGCTGG ATACCGCCGG ACGTTACGCC
ACCCAAGAGA GTCAGCAGGA GCGCGATGCC AGCGAATGGC ATCACTTCCT CGACCTGCTG
CGTAAGTATC GCGGTCGCCA GCCGATTAAT GGCGTGATCG TCACGCTGAG CGTGTCGGAT
CTGCTGACAC AATCACCGGA AGCGATGCGT AATCAGGCCA TCGCGCTACG CCAGCGCCTG
ATGGAGTTGC ATGACCGCCT CGGCATTCGC TTCCCGGTGT ATGTGCTGGT GACCAAAACC
GACCTGCTCA AAGGTTTCCG CAGCTACTTC GGTTCGCTGG ATAAAGCGCA ACGCGAACAG
ATCTGGGGGT TCACCTTCCC GTGGGCACAG GCCTCCACCG CTGACTTCGA ACTCAACAGC
CAGTTCCAAA AGGAATATTC GCTGCTACAA CAGCGTCTTG ATGCTGGCAT GGCCGATACG
TTGCTGGCAG AGAGAGATGG ACAGTCGCGC GCAGAGGTCT ATCTGTTCCC GCAGGAGTTT
GCCGCGTTGC GCCCAATGCT AGCGGATGCG CTTGACACGT TGTTCGCGCG TTCGGATTTT
GAAACCCAGT TCGCACCACG TGGCATCTAT TTTGCCAGCG GTACACAGGA AGGTCTGCCG
TTTGACCGTG TGATGGGGGA GTTGAACCGT GCTCTGCATC TGCCGAGCCA GCGAGAAGGT
GGATCCAGAC GCTGGGATCA GGTGGATAAA AACGCGCCGA TCCCACCGAA TAAAGGGCAA
AGCTTCTTCC TGAAAGACGT ACTGGAAAAC GTTATCTTTC AGGAATCGGG GCTTGCGGGT
AGCAACCGTT GGTGGGAACT GCGTAACCGT GCTGGTTTGT GGTCTGGCTA TCTGGCATTG
CTGGTGCTGA TACTGATTGC CGGGGGGCTG TGGGTTACCA GCTACAGTCA AAATAAATCT
TACCTGCAGG AAATCGCGGG CAAAACGCCG CAGGTTGAGC AACTCGGCCA GCAACTACAG
CGTGAAGGCC ACGGTGACTT GTTCGCTCTG GTGCCGTATC TCAATACCCT GCTGCAGTTG
CCTAAAAGCG CTGATTTCTC ACTGGACGCG CCGCCGCAGA CGCGCCGTAT GGGGCTCTAT
CGCGGGACTG AAATCAACGA TGCCACTCAG GCGTTGTATG GCAAAGCGCT AAAACAGTTG
CTGTTGCCGC AGGTGGCGCA AAATATTACG CGCTGGTTGC GCAACGACAA CGGCAGCGAT
GCCGACTACA GCTACGAAGC GCTAAAGGCG TATCAGATGC TGTATCAGCC GAAGCACTAC
GACGGTAAAT TCCTGCAGGC ATGGCTGATG CTAAATATCT CGCGCGAACT GCCGCAGAAC
GTCACTCAGC AGGAAGTTAA ACAACTGGCG TGGCATCTAC AACAACTGCT GGAGACGCAC
ATCCAGTCTT CGCCATACGC GAAGGATGAT GCGTTGATAA AGCGCGGGCA GGTGCTGATT
AACCAAATGC CGCTGTCACA ACGCGTCTAT GGGCGTCTGA AGCGCCTGCT GCAACGCGAT
GGCAGCCTGA AATCGGTGAC GCTCTCGGCG CTGGGCGGGC CACAGAGTGA ACTGGTGTTC
TCACGTAAAA GTGGTAAGTC GGTTAATGAT GGTGTGTCAG GCCTGTTTAC ACCGGATGGT
TACTGGCAGC GCGTTGATAA GCAAATTGCG CCAGTGACGC AGGCACTGTA TCAGGATGAT
ATCTGGGTGT TGGGCGGCAT CACGCCGCAG GAAAACAGCC AACAAACCGA TCTCGCAGTA
CGCCAATGGT ATGTACAGGA TTACATTCGT CAGTGGGAAC AGTTCCTTAG CGATATCCAA
CTCAACACTA GTGCTGATTT ACCGCAGCGC ATCAACACCG CGCGTTTGCT GTCCGGCAAC
CATTCACCGT TACGCCAATG GGTGATCAAT CTGGGAAAAT TGCTGACGCT GACGCTGACG
CGCGAGTCGG CGGATGAAAA AACGGCACAG GCGCAATCGT CATCCGGCAA CAACGCGACG
CGCACGCTGG AAGCGCTGTT CAACTCGATG GATACTAATG CAACGCAGGG GCAGGGGGCG
ACGCAGCAGT CACCGGAGCA GGCCGTTGCC GTGCATTTCG CCCCGATTAT CGAGTTGGCG
CAGCCGTTAC AGCCGGGCGG TAACGTGCTG GCGGTGGACG ATTTTCTACA TCAGATTGAC
GATCTCTATC GTTATCTCAC CGCGGTGCAG GATGCGGCCA ACAGCGGCAT GCCGCCACCA
CCGAACGATG CCATCAGCCG CCTGCAGGCC AGTGCTGGCC GTCTGCCGGG TTCGCTGCAG
AATATGGTCT CCAGTATGGC GGTTGGTGCC AGCAGCGATG CACAACGCCG TGACATGGAT
AACGTGCGCA AGCGCATCAC CATGGAAGTT GGCAGCTTCT GTCGTCAGGC GATCGCCGGT
CGTTATCCAC TGGTACGCAA CGCACGCAGT GAAGTGACGC CAGACGATCT GGCGCGCATG
TTCGCACCGG GCAGCGGCCT GATGGATAGC TTCTTCCGTG ACAATCTGGC CAGCAAAGTA
GACACCACTA ACGCCGCGTG GCGCTTTACG CCGGGTATCG ACGGTAAAAC GTTGCCGGGG
GGCGAAGCAC TGCTGCGTCC GTTCCAGCAG GCGCAGTCGA TTCGTGATGC CTTCTTTGCC
AACGGAGCCA CCACATCATC GTTCCGCATC ACGCTGCGCA CGGTGAAAAT GGATAACGCG
ATCCTCAACC TGACGCTGGA TGTTGACGGT CAGATTCTGC GTTACAGCCA CGGCCCGCAG
GCGGTGCAGA TGGTGAACTG GCCCGGTTCA GGCGGCACCA GCCAGGTGCG CATGCAGCTC
GGCCTGACTA ATGGCACTAC CTCGACGCTG GTCACCAGCG GCCCGTGGGC GCTTAATCGC
TTCTTCGATC GCGCCCGGCT GACCTCAACC GGCGGTTTAA CCCGCGAAGC CCGTTTCGAC
GTCGATGGTC ATCAGGTCAC GCTATCGTTC ACGCCTGGCA GTATTCGCAA CCCATTCCAG
CTTCCCAGCT TTGGCTGCCC CTGA
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| Protein sequence | MLNILFAVLT SRLAWGFVGI TALAFIIWVI GPVFSIADSR PLAPEHNRII SIALLYLVWG
LSQAIPRLYN FWLNRKLMSS LETGKTDAPE RLTNEEQALA SRFSEATGIL KKAHFQRNSS
KGAPFWAQRF SHQYLYQLPW CMIIGAPGAG KTTALVNSGL QFPLADKFGK AALRGIGGTR
NCDWWFTNEA VLLDTAGRYA TQESQQERDA SEWHHFLDLL RKYRGRQPIN GVIVTLSVSD
LLTQSPEAMR NQAIALRQRL MELHDRLGIR FPVYVLVTKT DLLKGFRSYF GSLDKAQREQ
IWGFTFPWAQ ASTADFELNS QFQKEYSLLQ QRLDAGMADT LLAERDGQSR AEVYLFPQEF
AALRPMLADA LDTLFARSDF ETQFAPRGIY FASGTQEGLP FDRVMGELNR ALHLPSQREG
GSRRWDQVDK NAPIPPNKGQ SFFLKDVLEN VIFQESGLAG SNRWWELRNR AGLWSGYLAL
LVLILIAGGL WVTSYSQNKS YLQEIAGKTP QVEQLGQQLQ REGHGDLFAL VPYLNTLLQL
PKSADFSLDA PPQTRRMGLY RGTEINDATQ ALYGKALKQL LLPQVAQNIT RWLRNDNGSD
ADYSYEALKA YQMLYQPKHY DGKFLQAWLM LNISRELPQN VTQQEVKQLA WHLQQLLETH
IQSSPYAKDD ALIKRGQVLI NQMPLSQRVY GRLKRLLQRD GSLKSVTLSA LGGPQSELVF
SRKSGKSVND GVSGLFTPDG YWQRVDKQIA PVTQALYQDD IWVLGGITPQ ENSQQTDLAV
RQWYVQDYIR QWEQFLSDIQ LNTSADLPQR INTARLLSGN HSPLRQWVIN LGKLLTLTLT
RESADEKTAQ AQSSSGNNAT RTLEALFNSM DTNATQGQGA TQQSPEQAVA VHFAPIIELA
QPLQPGGNVL AVDDFLHQID DLYRYLTAVQ DAANSGMPPP PNDAISRLQA SAGRLPGSLQ
NMVSSMAVGA SSDAQRRDMD NVRKRITMEV GSFCRQAIAG RYPLVRNARS EVTPDDLARM
FAPGSGLMDS FFRDNLASKV DTTNAAWRFT PGIDGKTLPG GEALLRPFQQ AQSIRDAFFA
NGATTSSFRI TLRTVKMDNA ILNLTLDVDG QILRYSHGPQ AVQMVNWPGS GGTSQVRMQL
GLTNGTTSTL VTSGPWALNR FFDRARLTST GGLTREARFD VDGHQVTLSF TPGSIRNPFQ
LPSFGCP
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