Gene Pecwa_2439 details

Gene Information

• Locus tag: Pecwa_2439
• ID: 8530840
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: -
• Start bp: 2639273
• End bp: 2641411
• Gene Length: 2139 bp
• Protein Length: 712 aa
• Translation table: 11
• GC content: 59%
• Product: type VI secretion system Vgr family protein
• Protein accession: YP_003259807
• Protein GI: 261821701

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCTCAC GCATCACCGC GCAGTTGCCG ATGGACGGCC TGCTGTTCTG GAAACTCTCG 
GGCACCGAGA CGTTGTCCCA CTCATTTGTG CTGACCGCCG ATCTGCTTGC CACCGACGCA 
CGGATTGACC GACATTCGCT GCTGGGCCAG CCGGTCACGT TCACACTGCC GACGCAGAGC 
CTGCTGAGCC CGCGTTACCT CAACGGCAAA ATCACTCGGG TCGCGGTGCG CAGCGAAGAG 
CTGAGCGGCA CGCGCTACGC GGTCTACACG CTGACGGTGG AATCGGACCT GTGGCCGATG 
CGGCGTGACC GCAATCTGCG CATCTTCCAG AGTCAGACGG TGCCGCAGAT AGTGCAGACG 
CTGCTGAAAG AGTACGGGGT GAATGTGGAG ATGCGTTTAT CGGGCAGCTA CCGGGTGTGG 
GAGTACTGCG TGCAGTATCA GGAGAGCAGC CTGGATTTCC TCAGCCGACT GATGGAGTTG 
GAGGGGATTT ACTACTGGTT CCGCCACGAG CAGGAGCGCC ACACGCTGGT GCTGTGCGAC 
GCGACAGACC AGCACAAGGC ATTTCCCGGC TACGAGACGA TGACATATCA CGTGACGCCG 
TCGGGTGGCA GCGTGACGGA AGAGGGCATC AGCCAGTGGT CGCTGGCAGA GAGCGTCACG 
CCGGGAATGT ACAGCACGGA CGATTACGAT TTTCGCAAGC CAAACGCGTG GATGCTTCAG 
GCGCGGCAGA ATCCGGCGTC GCCGACGCCG GGCTCGGTGG ACGTGTACGA CTGGCCGGGT 
CATTTTGTGG ACCACAGCCA CGGCGAGTTT TACACGCGTA TCCGTCAGGA GGTGTGGCAG 
GTAGAGCACC ACAGCGTGAG CGGGTCGGGT ACGGTGACGG GCATTGCACC GGGGTTTACC 
TTTGGTCTCC TTAACGCGCC GCATTTTAGC GACAACGGTG AGTATCTGGT GACATCGGCG 
ACGTATGTGT TTGAGGAAAA CAGCTACGCC AGCGGTGATA GCGGAGGCTC GAAGCACAAC 
ATTGCGTTCA CGGTGCTGCC CGCGTCGGTA ACGTTCCGGG CGCCCCCGAC GACGGCGTGG 
CCGAAGACGC ACGGCCCGCA GACGGCGAAG GTGGTGGGCC CGCAGGGAGA ATCTATCTGG 
ACGGACCGGT ACGGCCGGGT GAAGGTAAAG TTCCACTGGG ATCGACTGGC GAAGGGCGAC 
GACACCAGCT CGTGCTGGGT ACGTGTATCG AGCGCCTGGG CGGGTCAGGG ATTTGGCGGG 
GTGCAGATCC CGCGCGTGGG CGATGAAGTG GTGGTGGACT TCATCAACGG CGACCCGGAC 
CGCCCGCTGA TCATCGGCCG GGTGTACAAC GAGGCGAGCA TGCCGCCGTG GTCGCTGCCA 
GCGGCAGCGA CGCAGATGGG ATTTATGAGT CGGTCGAAAG ACGGCACGGC GGATACGGCG 
AACGCGCTGC GCTTTGAGGA CAAGTCGGGT GAGGAGCAGG TGTGGCTGCA AGCTCAGAAA 
AACATGGATA CGCATGTCAA GAATGACGAA ACCCACTCGA CTGACAGCAA TCGCACTAAA 
ACCATTGGTG GCAATGAAAC GACCAAGGTG AAAAAAAACC GCACCGAGAC GGTTGATCAA 
AATGAGACCC TCACCATCCA TCAGAACCGA ACCGAAACCG TGGACGGCAA TGAAACTATC 
ACCGTGCACA GCAACCGCAC GGAGACGGTC GATCAGAACG AAAGCGTGCG TATTGGTCAG 
AATCAGTCAG TCAGCGTAAA CGGTAATCAG ACGCTGAAGG TGGCTCAGGC GAAAACTGAA 
ACTATCGTGC TGGCTTCCAT GCTTAATGTG GGACTGGCGC AAAATACCAA TATCGGTGCG 
GCCTATGTGC TCAACGTGGG CGCGGGTTGG ATGACTACCG TGGGGGCGAT GCATATGCAC 
AACGTCGGCA GGAAATACTC CCTGAATGTC GGGCGCGATA TCGCGCTTTC TGCTGGCACG 
TCGGCCGAGA TCAGCGCGGA AAACAAGATT ACGCTGGCAT GTGGCGAGTC GAAGATTGTG 
CTGGAAAAGA ATGGCACGAT CACCCTCAGC GCGAACAACA TCAAGCTGGT AGGTGAGAAG 
GTGATCGACA TTGACGGAAC GCAGATAGAT ATCAATTGA 

 

Protein sequence

MFSRITAQLP MDGLLFWKLS GTETLSHSFV LTADLLATDA RIDRHSLLGQ PVTFTLPTQS 
LLSPRYLNGK ITRVAVRSEE LSGTRYAVYT LTVESDLWPM RRDRNLRIFQ SQTVPQIVQT 
LLKEYGVNVE MRLSGSYRVW EYCVQYQESS LDFLSRLMEL EGIYYWFRHE QERHTLVLCD 
ATDQHKAFPG YETMTYHVTP SGGSVTEEGI SQWSLAESVT PGMYSTDDYD FRKPNAWMLQ 
ARQNPASPTP GSVDVYDWPG HFVDHSHGEF YTRIRQEVWQ VEHHSVSGSG TVTGIAPGFT 
FGLLNAPHFS DNGEYLVTSA TYVFEENSYA SGDSGGSKHN IAFTVLPASV TFRAPPTTAW 
PKTHGPQTAK VVGPQGESIW TDRYGRVKVK FHWDRLAKGD DTSSCWVRVS SAWAGQGFGG 
VQIPRVGDEV VVDFINGDPD RPLIIGRVYN EASMPPWSLP AAATQMGFMS RSKDGTADTA 
NALRFEDKSG EEQVWLQAQK NMDTHVKNDE THSTDSNRTK TIGGNETTKV KKNRTETVDQ 
NETLTIHQNR TETVDGNETI TVHSNRTETV DQNESVRIGQ NQSVSVNGNQ TLKVAQAKTE 
TIVLASMLNV GLAQNTNIGA AYVLNVGAGW MTTVGAMHMH NVGRKYSLNV GRDIALSAGT 
SAEISAENKI TLACGESKIV LEKNGTITLS ANNIKLVGEK VIDIDGTQID IN