Gene Pecwa_1930 details

Gene Information

• Locus tag: Pecwa_1930
• ID: 8530329
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium wasabiae WPP163
• Kingdom: Bacteria
• Replicon accession: NC_013421
• Strand: +
• Start bp: 2093497
• End bp: 2095605
• Gene Length: 2109 bp
• Protein Length: 702 aa
• Translation table: 11
• GC content: 47%
• Product: TonB-dependent receptor
• Protein accession: YP_003259317
• Protein GI: 261821211

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAATAA ATATAAGAAA ATCGGTGGCA TTGGCACTTG CTACAACCGT ATCTACACCT 
GTTATCGCCG CACAGGACGA TACGCTGGTT GTAACGGCTT CTGGCTATGA ACAAAAAATC 
ACTGAGGCGG CAGCGAGTAT TTCTGTTGTC AACCAGGATG AACTGACGAA GCGTAAATAT 
AACGATCTTG GCGAAGCGCT CAGCGACGTG GAAGGCGTGG ATGTGCGTAG TTCAACGGGG 
AAAACGGGCG GTCTGGACAT CAGCATTCGC GGTATGCCAA GTGATTACAC GCTGATTCTG 
GTTGATGGTA TTCGCCAGAA TGGTTCATCG GATGTCACCC CGAACGGGTT TGGTACGATG 
AACACCAGCT TTATTCCCCC ATTGGCGGCG ATAGAGCGTA TTGAAGTTAT CCGCGGGCCG 
ATGTCAACGC TATATGGCTC TGATGCGATG GGTGGTGTGG TCAATATCAT CACCAAAAAA 
GCGTCGAAAG AGTGGGTTGG GAATATCACG CTGGATCATA CCTTCCAGGA AGACAGAGAC 
TATGGCGATG CTTCCAAGTT CTCGATTTAT TCCAGCGGTG CGCTGATCGA AGACAAACTG 
GGACTCGCCC TGCGCGGCAA TATTTTACGC CGTGATGCGT CAGAGGTGAA ATCTTCAGAG 
GGCGCTTTAC TGAATCAGCG AGGCGCTAAC CCTGTAAAAT CAGATAACTA TTTGCTAGGC 
GGCAAGTTAA CTTGGATCCT GAATGATAAT AACTCTCTAT GGCTGGATGG GGAAGTTGCC 
AACCAGCAAT ATGATAACAA GGAAAATCAG TTAGGAACGA TTGGTGCTAC CGGGGGCTAT 
GAGGGCTCCT TGCATTATCA ACGTCGCAAG TTAACGTTGG GGAGTGATAA TCAACTGAGT 
TTTGGTTCAT GGAACTCTAG CTTGTCTTAT AGCGAGACGG ATAACAAAGG CCGCCTCATT 
ACAACCGATT CTGTTCCCGC GGGTTCAGCA GCGGCAGGTC AGAAACGTCG TCTGGAAAAT 
ACCAACGTTA TTCTTGACTC GAAGCTGGTG GCTCCAGTAG GTGAAAGCCA CTTGGTTACT 
ATTGGCGGCC AGTATTGGAA TGCAACGATG AAAGATGGCG TCGTTTTGGC TAACGATGGG 
AATAAGTTTA AGCAAGATTC ATGGGCGCTG TTTAGCGAAG ATGAATGGCG CTTGCTGGAT 
TCATTAGCTT TAACCTATGG CGCACGCTAT GAGTATCATG AAACCTTCGG TGGCCATGTT 
AGCCCACGTG CTTATCTCGT TTGGAATGCA TTGGATGACT TGACGATAAA AGGCGGTGTA 
AGTACGGGTT ATAAAACCCC GTCACTGGCG CAACTCCATA ACGGCGTTAG CGGGGTAACA 
AATCAAGGAA CGGATACTGT CATTGGGAAT CCAAACCTGA AGCCTGAAGA GAGTACGAAT 
ACTGAACTGG GCGTTTATTA TGAGAACTAT ACTGGCTTCG CGGCGAATGC AACGCTGTTC 
AATAATCATT TCCGCAATAA AATTGACAGT TATAGTGTGT CAACTAACCC TGCGATTAGT 
ACCTACCGAA ACATTGGCAA GGCAGTGACT CAAGGGGTAG AGCTGGGCTC GAAAATTCCA 
TTGTGGTCAG AGGATTGGAC GCTGAATGTA AACTATACCT TTACGGATAG TGAGCAAAAA 
GGTGGCTTAA ACCCAGGAGC GCCTCTTACC AACACGCCGA AGCACATGGC TAATGCCCGT 
CTTAACTGGA ACGTTAATGA CAATCTCTCA ACGTGGTTGA AAGCAGAATA TCGCGACAAA 
ACTGCACGCT ATACGCAGAA TTATAGTAAC TTGCCTGCTT CTCAGAAGGC TGCATATGAT 
GATAAAGGCG CTTACTTTAA ATCTTTCACG GTGCTTAATT GGGGTGGTTC CTACAAGGTT 
TCAAAAGATG TGACCTTGAA TGGAGCAGTA AACAACCTGT TGGATAAAGA TTTCACCAGT 
GGTGTGCGCA CTTACGGTTC AGGAAGAGGT GCATTTACTA CCGCGGATTA TTACTCTTTC 
AACCGAGTTA CTTCAGGTTC CGTACTGCCA GGTCGTAACT ACTGGGTGTC AGTCAACGTC 
AACTTCTGA 

 

Protein sequence

MAINIRKSVA LALATTVSTP VIAAQDDTLV VTASGYEQKI TEAAASISVV NQDELTKRKY 
NDLGEALSDV EGVDVRSSTG KTGGLDISIR GMPSDYTLIL VDGIRQNGSS DVTPNGFGTM 
NTSFIPPLAA IERIEVIRGP MSTLYGSDAM GGVVNIITKK ASKEWVGNIT LDHTFQEDRD 
YGDASKFSIY SSGALIEDKL GLALRGNILR RDASEVKSSE GALLNQRGAN PVKSDNYLLG 
GKLTWILNDN NSLWLDGEVA NQQYDNKENQ LGTIGATGGY EGSLHYQRRK LTLGSDNQLS 
FGSWNSSLSY SETDNKGRLI TTDSVPAGSA AAGQKRRLEN TNVILDSKLV APVGESHLVT 
IGGQYWNATM KDGVVLANDG NKFKQDSWAL FSEDEWRLLD SLALTYGARY EYHETFGGHV 
SPRAYLVWNA LDDLTIKGGV STGYKTPSLA QLHNGVSGVT NQGTDTVIGN PNLKPEESTN 
TELGVYYENY TGFAANATLF NNHFRNKIDS YSVSTNPAIS TYRNIGKAVT QGVELGSKIP 
LWSEDWTLNV NYTFTDSEQK GGLNPGAPLT NTPKHMANAR LNWNVNDNLS TWLKAEYRDK 
TARYTQNYSN LPASQKAAYD DKGAYFKSFT VLNWGGSYKV SKDVTLNGAV NNLLDKDFTS 
GVRTYGSGRG AFTTADYYSF NRVTSGSVLP GRNYWVSVNV NF