| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_1606 |
|---|
| Symbol | |
|---|
| ID | 8530001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 1741995 |
|---|
| End bp | 1742513 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | type VI secretion system effector, Hcp1 family |
|---|
| Protein accession | YP_003259003 |
|---|
| Protein GI | 261820897 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACTC CATGCTATAT CAGCATCGAA GGAAAAACGC AGGGCAACAT CACCGCTGGA
GCCTTCACGT CTGATTCTGT CGGCAACATC TACGTGGAAG GCCACGAAGA TGAAATGCTG
GTACAGGAAT TCAAACACGT CGTCACCGTA CCGACCGACC CACAGTCAGG TCAGCCCTCC
GGCCAGCGCG TCCATAAGCC GTTCAAGTTC ACCGTTGCGC TGAACAAGGC CGTGCCGCTG
ATGTACAACG CCTTGGCCTC CGGTGAAATG CTGCCGACCG TGACCCTGAA GTGGTATCGC
ACCTCAGTGG AAGGCAAGCA AGAGCACTTC TTCTCTACTG TGCTGACTGA CGCCACTATC
GTTGACATCA ACTGCCAGAT GCCACATTGC CAGGACCCTT CCAAGCTCGA TTACACCCAG
TTGATCGAAG TCTCTCTGGC CTACCGCAAG GTTGACTGGG AGCACACGGT TGCCGGTACG
TCCGGCTCTG ATGACTGGCG CACGCCTGTC GAAGCCTGA
|
|---|
| Protein sequence | MPTPCYISIE GKTQGNITAG AFTSDSVGNI YVEGHEDEML VQEFKHVVTV PTDPQSGQPS
GQRVHKPFKF TVALNKAVPL MYNALASGEM LPTVTLKWYR TSVEGKQEHF FSTVLTDATI
VDINCQMPHC QDPSKLDYTQ LIEVSLAYRK VDWEHTVAGT SGSDDWRTPV EA
|
|---|
| |