Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_1136 |
Symbol | rluD |
ID | 8529512 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | + |
Start bp | 1222605 |
End bp | 1223582 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | |
Product | 23S rRNA pseudouridine synthase D |
Protein accession | YP_003258557 |
Protein GI | 261820451 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.339776 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCACAAC AAGTACAACT CACCGCAACG GTGGCCGAAT CTCAACTCGG ACAACGTTTA GATCAGGCTT TGGCCGAATT GTTCCCTGAT TATTCTCGAT CCCGTATAAA AGAGTGGATT CTTGAGAATC GGGTACAGAT TAACGGCAAT GTCATCAATA AGCCAAAAGA GAAAGTACTT GGCGGCGAAT CGGTAGCCAT TGATGCATTG ATTGAAGAAG AAGCACGCTG GGAAGCACAG GATATCAAGT TGGATATCGT GTACGAAGAT CAGGATATTC TGGTTATTAA CAAATCCAGA GATCTGGTGG TTCACCCTGG TGCGGGTAAT CCAGATGGCA CGGTATTGAA TGCTTTGTTA CATCATTATC CTGAGATTGT CGATGTGCCC CGCGCTGGGA TTGTGCATCG GCTTGATAAA GATACGACAG GACTCATGGT TGTCGCGAAA ACCGTGCCGG CACAGACTCG TCTCGTTGAG GCGTTGCAGG CACGCGAAAT CACTCGTGAG TATGAGGCTG TCGCGATTGG TTCTATGACG GCAGGCGGTA TGGTCGAGCA ACCTATCGCC CGTCACGCAA CTAAGCGTAC TCACATGGCT GTACACCCGA TGGGCAAGCC GGCAGTCACG CATTACCGCA TCATGGAACA TTTCCGTGCG CATACCCGCT TGCGATTGCG GTTGGAAACG GGACGCACCC ACCAGATTCG TGTGCATATG TCACACATTA ACCATCCACT GGTTGGCGAT CAGTTATACG GCGGTCGCCC TCGTCCGCCA AAAGGCGCGT CGGATGATTT CATTGAGACG CTGCGTGGGT TCGATCGTCA GGCTCTGCAC GCTACCATGC TACGCTTCTA CCATCCTATT ACCGGAATCC AAATGGAATG GCATGCGGCA TTACCGCAGG ATATGGTCGA TCTGATTGAG GCGCTGAAAG CCGATACTGA AGCGTTTAAG GATCAACTCG ACTGGTAA
|
Protein sequence | MAQQVQLTAT VAESQLGQRL DQALAELFPD YSRSRIKEWI LENRVQINGN VINKPKEKVL GGESVAIDAL IEEEARWEAQ DIKLDIVYED QDILVINKSR DLVVHPGAGN PDGTVLNALL HHYPEIVDVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE ALQAREITRE YEAVAIGSMT AGGMVEQPIA RHATKRTHMA VHPMGKPAVT HYRIMEHFRA HTRLRLRLET GRTHQIRVHM SHINHPLVGD QLYGGRPRPP KGASDDFIET LRGFDRQALH ATMLRFYHPI TGIQMEWHAA LPQDMVDLIE ALKADTEAFK DQLDW
|
| |