| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pecwa_0009 |
|---|
| Symbol | |
|---|
| ID | 8528359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium wasabiae WPP163 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013421 |
|---|
| Strand | + |
|---|
| Start bp | 11524 |
|---|
| End bp | 12837 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | PTS system, lactose/cellobiose family IIC subunit |
|---|
| Protein accession | YP_003257485 |
|---|
| Protein GI | 261819379 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAT TAAGCGAGTC ATTATTCAGC GTTATCGAAA ATCGTATTAG CCCGATTGCA
GCAAAACTCT CCAGCCAGCG TCATGTTGTG GCAATTAAGG ATGGGTTCAT TGCCTCCATG
CCCTTTTTAA TTGTCGGCTC TTTTATGATG CTATTCGCCC ATCCGCCTTT TAGCCCGACG
AGTGAATGGG CTTTCGCGCA GTGGTGGTTG GGAATGGTGG AACGCCACGG CGAACAGATC
ATGATGCCCT ACAATATGAC GATGGGCATT ATGGCGGTGT ATATCACCAG CGCCATCGCT
TATAACCTGG CGCAGAGCTA TAAAATGAAC GGTTTTATGG CTGCCAGTCT GGCGCTGATG
TCGTTTATGG TGGTGGCCGC GCCGCAGGTC GATAAGAGCT TGCCGGTCGG GTCGCTGGGC
GGTGAGGGGA TTTTCACCGC GATTATCGTG GCGATCTACT CGACGGAGCT GATGCACTTT
TTGCAGAAGC GGAATATTGG TATTCGCCTG CCGGAGCAGG TGCCGCCGAA AATCCGCCAG
TCTTTTGATT TACTGATCCC GATCCTTGCC ATCTTCCTGA CGCTTTTCCC GCTTAGCCTG
TTTATGCAGA ACCAGTTCGG TATGTTGTTA CCGCAGGCGA TTATGGCGAT CTTTGCACCG
ATTATCTCAG CATCCGACTC GCTTCCCGCG ATCCTGATCG CGGTACTGCT TTGTCACCTG
CTGTGGTTTG CCGGGATCCA CGGCGCGGTG ATTGTGACGG GGATTTTGCA GGCATTCTGG
CTGACCAACT TAGGGATCAA TCAGGAAGCG TTTAACGCAG GCGCACCGAT CACCAAAATT
TTCATTGAGC CCTTCTGGCA ATTCTTCATT ACGGTGGGAG GATCGGGGGC GACCATGGGG
CTGGTTTTTC TCTATCTGCG TAGCCGCTCT GCCCACCTGC GCTCCATCGG CAAGCTGGCT
GTAGTGCCGA GTATGTTCAA TATCAACGAA CCGGTGATTT TTGGTTCACC CGTCGTAATG
AACCCGCTGC TGTTTATCCC GTTTATTACG GCACCGTTGG TGAACGCCAC AATCGCCTAT
ATCGCATTAA AAACCGATTT AGTGCACCGC GTGATTTCTC TTGCACCCTG GACCACGCCG
GGCCCGATTG GCGCAGCCTG GTCTACGGGG TGGGACTGGC GCGCGGTGGT GCTGGTGGGG
GTACTGATTA TCGTGTCGTC CTTAATTTAT TACCCCTTCT TCAAAATGTA TGAACGCCAA
CTGATCGCAC AGGAAGTGGG TACAGCAGAG GAGGTCGTGA ATGATGCTCG ATGA
|
|---|
| Protein sequence | MSKLSESLFS VIENRISPIA AKLSSQRHVV AIKDGFIASM PFLIVGSFMM LFAHPPFSPT
SEWAFAQWWL GMVERHGEQI MMPYNMTMGI MAVYITSAIA YNLAQSYKMN GFMAASLALM
SFMVVAAPQV DKSLPVGSLG GEGIFTAIIV AIYSTELMHF LQKRNIGIRL PEQVPPKIRQ
SFDLLIPILA IFLTLFPLSL FMQNQFGMLL PQAIMAIFAP IISASDSLPA ILIAVLLCHL
LWFAGIHGAV IVTGILQAFW LTNLGINQEA FNAGAPITKI FIEPFWQFFI TVGGSGATMG
LVFLYLRSRS AHLRSIGKLA VVPSMFNINE PVIFGSPVVM NPLLFIPFIT APLVNATIAY
IALKTDLVHR VISLAPWTTP GPIGAAWSTG WDWRAVVLVG VLIIVSSLIY YPFFKMYERQ
LIAQEVGTAE EVVNDAR
|
|---|
| |