Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Adeg_0588 |
Symbol | |
ID | 8490564 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ammonifex degensii KC4 |
Kingdom | Bacteria |
Replicon accession | NC_013385 |
Strand | + |
Start bp | 611526 |
End bp | 612590 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 646358615 |
Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
Protein accession | YP_003238586 |
Protein GI | 260892489 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.911262 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGGCGGC TCACCCGTCC TGTGTTTTTG GGCAAGGTAC AGATCGGCGG CGGGGCGCCG GTGGTGGTTC AGTCCATGAC CAAAACCCCC ACCCGGGACG TCGAGCGCAC GGTGGCCCAG ATTCGCTCGC TGGAGGAGGC CGGCTGCGAA GTGGTCCGGG TGGCGGTGCC AGATTTAGAA TCAGCCCGGG CCATCGAGAA AATAAAGGCG CGGGTTTCTC TCCCTTTGGT CGCCGATGTT CATTTCGATT ACCGCCTGGC CTTAGCGGCT TTAGAAGCCG GAGCTGACGG GTTGCGACTA AACCCTGGAA ACATAGGGGA TAAAGAAAAG ATTAGAAAAG TGGTGGACAA GGCGCGGGAG CGCCAGGTTC CCATAAGGAT AGGGGTGAAC GCCGGCTCGC TGGAAAAGGA CCTTTACGCC AAGTACGGGG GCGTGACGGC GGAGGCCCTG GTGGAAAGCG CCTTGCGCCA CGTGCGCCTG CTGGAGGAGA TGGACTTCCG CTTGATAAAA ATTTCCGTCA AGGCTTCCGA CGTCCCCTTG ACGGTCCAAG CTTACCGGCT TTTGAGTCAG AAAGTGGACT ATCCCTTGCA CGTGGGGATA ACCGAGGCGG GTCCCGGAGA CCGGGGGCTC ATAAAGTCGG CCGTGGGGCT AGGGATCTTA TTGGCAGAAG GAATAGGGGA CACTATCCGC GTTTCCCTCA CCGGCGACCC CTGCTACGAG GTCTGGGCTG CGTGGGAGAT CCTCAAGGTT TTAGGACTTA GGAAGCGTGG GATAGAGCTT ATTTCCTGCC CCACCTGCGG GCGCTGCGAG ATAGACGTGC TTACCATAGC CACCGAGGTG GACCGGCGGC TTCGTCGGGT GACGGCACCC ATCAAGGTGG CGGTCATGGG GTGCGTGGTC AACGGGCCGG GGGAGGCTCG GGAGGCCGAC GTGGGCCTGG CCGGGGGACG AGGCTGGGGA GTCATCTTCC GGCATGGTTG CCCGGTGAAG AAGGTGCCGG CCGAGCGGCT GGCAGAAGAG CTCCTGGCCA CTATCAGGGA AATGGGCATA GAGGGAGTAG AATGA
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Protein sequence | MRRLTRPVFL GKVQIGGGAP VVVQSMTKTP TRDVERTVAQ IRSLEEAGCE VVRVAVPDLE SARAIEKIKA RVSLPLVADV HFDYRLALAA LEAGADGLRL NPGNIGDKEK IRKVVDKARE RQVPIRIGVN AGSLEKDLYA KYGGVTAEAL VESALRHVRL LEEMDFRLIK ISVKASDVPL TVQAYRLLSQ KVDYPLHVGI TEAGPGDRGL IKSAVGLGIL LAEGIGDTIR VSLTGDPCYE VWAAWEILKV LGLRKRGIEL ISCPTCGRCE IDVLTIATEV DRRLRRVTAP IKVAVMGCVV NGPGEAREAD VGLAGGRGWG VIFRHGCPVK KVPAERLAEE LLATIREMGI EGVE
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