Gene Adeg_0588 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAdeg_0588 
Symbol 
ID8490564 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAmmonifex degensii KC4 
KingdomBacteria 
Replicon accessionNC_013385 
Strand
Start bp611526 
End bp612590 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content61% 
IMG OID646358615 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_003238586 
Protein GI260892489 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.911262 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGGCGGC TCACCCGTCC TGTGTTTTTG GGCAAGGTAC AGATCGGCGG CGGGGCGCCG 
GTGGTGGTTC AGTCCATGAC CAAAACCCCC ACCCGGGACG TCGAGCGCAC GGTGGCCCAG
ATTCGCTCGC TGGAGGAGGC CGGCTGCGAA GTGGTCCGGG TGGCGGTGCC AGATTTAGAA
TCAGCCCGGG CCATCGAGAA AATAAAGGCG CGGGTTTCTC TCCCTTTGGT CGCCGATGTT
CATTTCGATT ACCGCCTGGC CTTAGCGGCT TTAGAAGCCG GAGCTGACGG GTTGCGACTA
AACCCTGGAA ACATAGGGGA TAAAGAAAAG ATTAGAAAAG TGGTGGACAA GGCGCGGGAG
CGCCAGGTTC CCATAAGGAT AGGGGTGAAC GCCGGCTCGC TGGAAAAGGA CCTTTACGCC
AAGTACGGGG GCGTGACGGC GGAGGCCCTG GTGGAAAGCG CCTTGCGCCA CGTGCGCCTG
CTGGAGGAGA TGGACTTCCG CTTGATAAAA ATTTCCGTCA AGGCTTCCGA CGTCCCCTTG
ACGGTCCAAG CTTACCGGCT TTTGAGTCAG AAAGTGGACT ATCCCTTGCA CGTGGGGATA
ACCGAGGCGG GTCCCGGAGA CCGGGGGCTC ATAAAGTCGG CCGTGGGGCT AGGGATCTTA
TTGGCAGAAG GAATAGGGGA CACTATCCGC GTTTCCCTCA CCGGCGACCC CTGCTACGAG
GTCTGGGCTG CGTGGGAGAT CCTCAAGGTT TTAGGACTTA GGAAGCGTGG GATAGAGCTT
ATTTCCTGCC CCACCTGCGG GCGCTGCGAG ATAGACGTGC TTACCATAGC CACCGAGGTG
GACCGGCGGC TTCGTCGGGT GACGGCACCC ATCAAGGTGG CGGTCATGGG GTGCGTGGTC
AACGGGCCGG GGGAGGCTCG GGAGGCCGAC GTGGGCCTGG CCGGGGGACG AGGCTGGGGA
GTCATCTTCC GGCATGGTTG CCCGGTGAAG AAGGTGCCGG CCGAGCGGCT GGCAGAAGAG
CTCCTGGCCA CTATCAGGGA AATGGGCATA GAGGGAGTAG AATGA
 
Protein sequence
MRRLTRPVFL GKVQIGGGAP VVVQSMTKTP TRDVERTVAQ IRSLEEAGCE VVRVAVPDLE 
SARAIEKIKA RVSLPLVADV HFDYRLALAA LEAGADGLRL NPGNIGDKEK IRKVVDKARE
RQVPIRIGVN AGSLEKDLYA KYGGVTAEAL VESALRHVRL LEEMDFRLIK ISVKASDVPL
TVQAYRLLSQ KVDYPLHVGI TEAGPGDRGL IKSAVGLGIL LAEGIGDTIR VSLTGDPCYE
VWAAWEILKV LGLRKRGIEL ISCPTCGRCE IDVLTIATEV DRRLRRVTAP IKVAVMGCVV
NGPGEAREAD VGLAGGRGWG VIFRHGCPVK KVPAERLAEE LLATIREMGI EGVE